Table 7 Simple sequence repeats (SSRs) statistics
Dinucleotide repeat | Number of di-pSSR | % |
|---|---|---|
AC/GT | 6 | 3.3 |
AG/CT | 136 | 75.1 |
AT/AT | 39 | 21.6 |
Total | 181 | 100 |
Trinucleotide repeat | Number of Tri-pSSR | % |
AAC/GTT | 9 | 5.1 |
AAG/CTT | 59 | 33.5 |
AAT/ATT | 3 | 1.7 |
ACC/GGT | 21 | 11.9 |
ACG/CTG | 9 | 5.1 |
ACT/ATG | 25 | 14.2 |
AGC/CGT | 15 | 8.5 |
AGG/CCT | 18 | 10.2 |
AGT/ATC | 11 | 6.3 |
CCG/CGG | 6 | 3.4 |
Total | 176 | 100 |
Tetranucleotide repeat | Number of tetra-pSSR | % |
AAAC/GTTT | 1 | 6.7 |
AAAG/CTTT | 5 | 33.3 |
AAAT/ATTT | 6 | 40 |
ACGT/ATGC | 1 | 6.7 |
ACTC/AGTG | 1 | 6.7 |
AGCT/ATCG | 1 | 6.7 |
Total | 15 | 100 |
Tetranucleotide repeat | Number of tetra-pSSR | % |
AAAAC/GTTTT | 1 | 14.3 |
AAAAG/CTTTT | 1 | 14.3 |
AAAGC/CGTTT | 1 | 14.3 |
AAGAG/CTCTT | 3 | 42.8 |
AATGT/ACATT | 1 | 14.3 |
Total | 7 | 100 |