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Table 2 Simulation results for Examples 1 and 2

From: A robust penalized method for the analysis of noisy DNA copy number data

 

Methods

AR(2)

AR(1)

Ind.

Example 1

LAD-aFL

5.225 (0.831)1

5.375 (0.806)

4.750 (0.669)

  

4.9252, 0.3003

4.975, 0.400

4.750, 0

 

LS-FL

4.250 (1.149)

4.750 (0.707)

4.550 (0.959)

  

4.250, 0

4.725, 0.025

4.525, 0.025

 

LAD-FL

5.025 (0.479)

4.975 (0.806)

4.350 (1.167)

  

4.850, 0.175

4.900, 0.075

4.275, 0.075

Example 2

LAD-aFL

5.275 (0.598)

5.475 (0.784)

4.925 (0.350)

  

5.000, 0.275

4.925, 0.550

4.900, 0.025

 

LS-FL

2.850 (1.189)

3.750 (1.171)

3.125 (1.362)

  

2.850, 0

3.750, 0

3.125, 0

 

LAD-FL

4.850 (0.533)

4.800 (0.791)

4.575 (0.874)

  

4.850, 0

4.575, 0.225

4.450, 0.125

  1. 1The average number (with standard deviation) of all detected breakpoints;
  2. 2 The correctly detected breakpoints of the true breakpoints on average;
  3. 3The falsely detected breakpoints on average.