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Table 3 Candidate genes expressed in GO terms influencing the niche microenvironment, of stem/progenitor cells

From: Comparative transcriptional profiling of the limbal epithelial crypt demonstrates its putative stem cell niche characteristics

LEC

Limbus

Cornea

Accession No

Gene Symbol

Accession No

Gene Symbol

Accession No

Gene Symbol

CAM

NM_022843

PCDH20 (1.9)

NM_002318

LOXL2 (2.5)

AL109804

SIGLEC1 (1.7)

AL109804

SIGLEC1 (1.8)

-

-

NM_022121

PERP (4.9)

NM_004360

CDH1 (3.1)

-

-

NM_002589

PCDH7 (3.2)

-

-

-

-

NM_004572

PKP2 (3.8)

Growth factors

-

-

NM_007083

NUDT6 (1.7)

NM_014624

S100A6 (5.7)

-

-

-

-

U62317

ECGF1 (2.7)

-

-

-

-

AC005234

TGFA (2.6)

-

-

-

-

NM_004494

HDGF (3.3)

Cytokines

-

-

NM_002350

LYN (1.2)

NM_199193

BRE (3.3)

-

-

-

-

NM_005625

SDCBP (2.4)

-

-

-

-

NM_021709

SIVA1 (3.8)

-

-

-

-

NM_017801

CMTM6 (3.9)

-

-

-

-

NM_004757

SCYE1 (7.9)

-

-

-

-

NM_016951

CKLF (3.9)

-

-

-

-

U52912

LEPR (3.5)

-

-

-

-

NM_000565

IL6R (8.7)

-

-

-

-

AJ271736

IL9R (4.2)

Antioxidants

NM_006406

PRDX4 (4.1)

NM_012094

PRDX5 (1.6)

NM_000454

SOD1 (3.9)

NM_000636

SOD2 (3.5)

NM_000636

SOD2 (1.6)

NM_000636

SOD2 (4.9)

-

-

-

-

NM_002574

PRDX1 (4.3)

-

-

-

-

NM_006793

PRDX3 (1.9)

-

-

-

-

NM_006406

PRDX4 (7.2)

-

-

-

-

NM_012094

PRDX5 (3.0)

-

-

-

-

NM_004528

MGST3 (3.7)

-

-

-

-

NM_018445

SELS (2.0)

-

-

-

-

NM_018833

TAP2 (2.9)

-

-

-

-

NM_000852

GSTP1 (3.7)

Neurotropins

NM_002615

SERPINF1(2.4)

NM_002615

SERPINF1(3.1)

AY029066

Humanin (4.3)

Immunomodulatory

AL109804

SIGLEC1 (1.8)

AL035662

CD40 (1.5)

AF098366

IGHG1 (5.6)

-

-

-

-

NM_030790

ITFG1 (4.4)

-

-

-

-

AL035662

CD40 (2.3)

Extracellular matrix

-

-

NM_002318

LOXL2 (2.5)

BC004241

LAMA4 (2.8)