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Table 1 48 Putative LexA binding sites identified by phylogenetic footprinting analysis

From: Computational analysis of LexA regulons in Cyanobacteria

Genome

Transcription Unit

Name

Putative LexA-binding sites

Position1

Acaryochloris marina MBIC11017

AM1_3549 AM1_3550

- recA

AATAAATCTGTACT

-97

 

AM1_3948

lexA

AGTACAGGTGTTTT

-132

Anabaena variabilis ATCC 29413

Ava_2176

-

AGTTCTCATGTACT

-144

 

Ava_1462

-

AGTACTTATGTACT

-56

 

Ava_3591

-

AGTTCTTCTGTATC

-112

 

Ava_2198

lexA

AGTACTAATGTTCT

-47

 

Ava_2059 Ava_2058

- -

CGTACATTTGTACC

-71

 

Ava_4925

recA

AGTATATCTGTTCT

-93

Cyanothece PCC 8801

PCC8801_0945

-

AAAACTCTTGTACT

-78

 

PCC8801_2186 PCC8801_2185

- -

AGTACTTATGTTCG

-101

Microcystis aeruginosa NIES 843

MAE_39060

ssb

CATACTATTGTACT

-59

 

MAE_16070

recA

CATACTGCTGTACT

-68

Nostoc punctiforme PCC 73102

Npun_F1842

-

AGTACACCTGTACT

-56

 

Npun_F2914

recA

AGTATATCTGTTCT

-102

 

Npun_F6100 Npun_F6101 Npun_F6102

- - -

AGTACGATTGTTCT

-111

 

Npun_R5568 Npun_R5567

- -

CGTACATTTGTACT

-74

Nostoc sp PCC7120

alr4908

lexA

AGTACTAATGTTCT

-35

 

all4790 all4789

- -

CGTACATTTGTACC

-31

 

alr4905

-

AGTTCTCATGTACT

-100

 

alr3716

uvrA

AGTACTATTGTTCT

-72

 

alr0088

ssb

AGTACTTATGTACT

-16

 

all3272

recA

AGTATATCTGTTCT

-52

Prochlorococcus marinus AS9601

A9601_17691

recA

AGTACAGATGTACT

-126

Prochlorococcus marinus CCMP1375

Pro1784

ssb

AAAACATAAGTATT

-109

Prochlorococcus marinus MED4

PMM1562

recA

AGTACACATGTACT

-123

 

PMM1262

lexA

GGTACAAATGTATT

-57

Prochlorococcus marinus MIT9313

PMT0380

-

GGTACACATGTATT

-56

Prochlorococcus marinus MIT9211

P9211_13051 P9211_13041

lexA -

GGTACATATGTATT

-69

Prochlorococcus marinus MIT9215

P9215_18341

recA

AGTACAGATGTACT

-126

Prochlorococcus marinus MIT9301

P9301_17531

recA

AGTACAGATGTACT

-125

Prochlorococcus marinus MIT9303

P9303_19141

lexA

GGTACACATGTATT

-81

Prochlorococcus marinus MIT9312

PMT9312_1654

recA

AGTACAGATGTACT

-126

Prochlorococcus marinus MIT9515

P9515_17441

recA

AGTACGCATGTACT

-123

 

P9515_18121

-

AATATATCTATTCT

-139

Prochlorococcus marinus NATL1A

NATL1_20071

recA

CGTACGTCTGTACT

-132

 

NATL1_16801

lexA

AGGACAAATGTACT

-52

Prochlorococcus marinus NATL2A

PMN2A_1133

recA

CGTACGTCTGTACT

-132

 

PMN2A_0828

lexA

AGGACGAATGTACT

-52

Synechococcus CC9605

Syncc9605_0929

lexA

GGTACAAATGTATT

-61

 

Syncc9605_0104

-

GATACCGCAGTTTA

-140

Synechococcus CC9902

Syncc9902_1949

recA

CGTACGTTTGTACT

-104

 

Syncc9902_1481

lexA

GGTACAAATGTATT

-59

Synechococcus PCC7002

SYNPCC7002_A0426 SYNPCC7002_A0425 SYNPCC7002_A0424

recA - -

AGTACGATTGAACT

-90

 

SYNPCC7002_A0119

ssb

AGAACAGTTGTATG

-53

Synechococcus RCC307

SynRCC307_1756

lexA

GGCACAAATGTATT

-39

Synechococcus WH7803

SynWH7803_0171

ssb

CAACCGTCAGTTCT

-56

 

SynWH7803_0439

recA

CGTACATCTGTACT

-172

Synechococcus sp WH8102

SYNW2062

recA

CGTACGCCTGTACT

-104

  1. 1. Positions of the LexA binding sites relative to the first codon of the operon.