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Table 1 48 Putative LexA binding sites identified by phylogenetic footprinting analysis

From: Computational analysis of LexA regulons in Cyanobacteria

Genome Transcription Unit Name Putative LexA-binding sites Position1
Acaryochloris marina MBIC11017 AM1_3549 AM1_3550 - recA AATAAATCTGTACT -97
  AM1_3948 lexA AGTACAGGTGTTTT -132
Anabaena variabilis ATCC 29413 Ava_2176 - AGTTCTCATGTACT -144
  Ava_1462 - AGTACTTATGTACT -56
  Ava_3591 - AGTTCTTCTGTATC -112
  Ava_2198 lexA AGTACTAATGTTCT -47
  Ava_2059 Ava_2058 - - CGTACATTTGTACC -71
  Ava_4925 recA AGTATATCTGTTCT -93
Cyanothece PCC 8801 PCC8801_0945 - AAAACTCTTGTACT -78
  PCC8801_2186 PCC8801_2185 - - AGTACTTATGTTCG -101
Microcystis aeruginosa NIES 843 MAE_39060 ssb CATACTATTGTACT -59
  MAE_16070 recA CATACTGCTGTACT -68
Nostoc punctiforme PCC 73102 Npun_F1842 - AGTACACCTGTACT -56
  Npun_F2914 recA AGTATATCTGTTCT -102
  Npun_F6100 Npun_F6101 Npun_F6102 - - - AGTACGATTGTTCT -111
  Npun_R5568 Npun_R5567 - - CGTACATTTGTACT -74
Nostoc sp PCC7120 alr4908 lexA AGTACTAATGTTCT -35
  all4790 all4789 - - CGTACATTTGTACC -31
  alr4905 - AGTTCTCATGTACT -100
  alr3716 uvrA AGTACTATTGTTCT -72
  alr0088 ssb AGTACTTATGTACT -16
  all3272 recA AGTATATCTGTTCT -52
Prochlorococcus marinus AS9601 A9601_17691 recA AGTACAGATGTACT -126
Prochlorococcus marinus CCMP1375 Pro1784 ssb AAAACATAAGTATT -109
Prochlorococcus marinus MED4 PMM1562 recA AGTACACATGTACT -123
  PMM1262 lexA GGTACAAATGTATT -57
Prochlorococcus marinus MIT9313 PMT0380 - GGTACACATGTATT -56
Prochlorococcus marinus MIT9211 P9211_13051 P9211_13041 lexA - GGTACATATGTATT -69
Prochlorococcus marinus MIT9215 P9215_18341 recA AGTACAGATGTACT -126
Prochlorococcus marinus MIT9301 P9301_17531 recA AGTACAGATGTACT -125
Prochlorococcus marinus MIT9303 P9303_19141 lexA GGTACACATGTATT -81
Prochlorococcus marinus MIT9312 PMT9312_1654 recA AGTACAGATGTACT -126
Prochlorococcus marinus MIT9515 P9515_17441 recA AGTACGCATGTACT -123
  P9515_18121 - AATATATCTATTCT -139
Prochlorococcus marinus NATL1A NATL1_20071 recA CGTACGTCTGTACT -132
  NATL1_16801 lexA AGGACAAATGTACT -52
Prochlorococcus marinus NATL2A PMN2A_1133 recA CGTACGTCTGTACT -132
  PMN2A_0828 lexA AGGACGAATGTACT -52
Synechococcus CC9605 Syncc9605_0929 lexA GGTACAAATGTATT -61
  Syncc9605_0104 - GATACCGCAGTTTA -140
Synechococcus CC9902 Syncc9902_1949 recA CGTACGTTTGTACT -104
  Syncc9902_1481 lexA GGTACAAATGTATT -59
Synechococcus PCC7002 SYNPCC7002_A0426 SYNPCC7002_A0425 SYNPCC7002_A0424 recA - - AGTACGATTGAACT -90
  SYNPCC7002_A0119 ssb AGAACAGTTGTATG -53
Synechococcus RCC307 SynRCC307_1756 lexA GGCACAAATGTATT -39
Synechococcus WH7803 SynWH7803_0171 ssb CAACCGTCAGTTCT -56
  SynWH7803_0439 recA CGTACATCTGTACT -172
Synechococcus sp WH8102 SYNW2062 recA CGTACGCCTGTACT -104
  1. 1. Positions of the LexA binding sites relative to the first codon of the operon.