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Table 3 List of primers used in this study

From: An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNA

Gene

cDNA length (bp)

Genbank accession number

Forward primer

Reverse primer

Distance from 3' end (bp)

ANXA1

1399

NM_000700

GGAACGCTTTGCTTTCTCTTG

TTCTGGTGGTAAGGATGGTATTG

795

ACTB

1852

NM_001101

AGAAAATCTGGCACCACACC

GGGGTGTTGAAGGTCTCAAA

1520

ELANE

938

NM_001972

CGGGCTAATCCACGGAATTG

TTGTCCTCGGAGCGTTGG

273

GAPDH

1310

NM_002046

CAGCCTCAAGATCATCAGCA

TGTGGTCATGAGTCCTTCCA

782

HAMP

430

NM_021175

AGTGGCTCTGTTTTCC

GAAGTGGGTGTCTCG

292

HIF1A

4082

NM_001530

AGAAGGTATGTGGCATTTATTTGG

CAGGGTAGGCAGAACATTTAGG

516

   

CGTGTTATCTGTCGCTTTGAGTC

TTTCGCTTTCTCTGAGCATTCTG

1611

   

TTGGCAGCAACGACACAG

GCAGGGTCAGCACTACTTC

2440

   

AGCCGAGGAAGAACTATGAAC

ACTGAGGTTGGTTACTGTTGG

3149

   

CCTGACAAGCCACCTGAG

TCGTGAGACTAGAGAGAAGC

3892

LY96

619

NM_015364

TGCCGAGGATCTGATGAC

ATTAGGTTGGTGTAGGATGAC

245

MMP9

2387

NM_004994

AACTACGACACCGACGAC

CAGGCGGAGTAGGATTGG

1587

STAT3

4900

NM_003150

GCTGGCTGACTGGAAGAG

AGTTGAGATTCTGCTAATGACG

3943

TFRC

5241

NM_003234

ATTGAACCTGGACTATGAGAG

GGAAGTAGCACGGAAGAAG

3140

TNF-α-1

1669

NM_000594

AGTGACAAGCCTGTAGCC

GGACCTGGGAGTAGATGAG

1243

TNF-α-2

1669

NM_000594

AAACAATGCTGATTTGGTGAC

GGCGATTACAGACACAACTCC

119

VEGFB

1172

NM_003377

CTGTGGTGGCTGCTG

ACTGGCTGTGTTCTTCC

901

  1. Primers were designed with the Beacon Designer software. All PCR products were sequenced to confirm specificity.