Skip to main content

Table 2 Genes with Gene Ontology annotation 'positive regulation of transcription, DNA-dependent' significantly regulated in zebrafish gill by zinc supplementation for 8 h to 14 days as indicated.

From: Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation

Time point Unigene ID Gene Description Gene symbol Human homologuea Reg.b
8 h Dr.75386 Hypothetical protein LOC100001897 (LOC100001897) LOC100001897 THRAP1
  Dr.113555 Hip2 hip2 HIP2
  Dr.82162 Polymerase (RNA) II (DNA directed) polypeptide E (polr2e) polr2e POLR2E
  Dr.99315 GLI-Kruppel family member GLI3 (gli3) gli3 GLI3
  Dr.80037 TAR (HIV) RNA binding protein 2 (tarbp2) tarbp2 TARBP2
  Dr.27060 Nuclear receptor subfamily 1, group I, member 2 (nr1i2) nr1i2 NR1I2
24 h Dr.52129 Similar to Pax-family transcription factor 6.2 (LOC557147) LOC557147 PAX6
  Dr.81306 GATA-binding protein 4 (gata4) gata4 GATA4
  Dr.1064 V-jun sarcoma virus 17 oncogene homolog (avian) (jun) Jun JUN
  Dr.76866 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Smarcc1) smarcc1 SMARCC1
  Dr.82597 Homeo box A2b (hoxa2b) hoxa2b HOXA2
  Dr.134300 Si:ch211-239e6.3 (si:ch211-239e6.3) ppara PPARA
  Dr.82680 Sal-like 1a (Drosophila) (sall1a) sall1a SALL1
  Dr.76928 MAD homolog 1 (Drosophila) (smad1) smad1 SMAD1
  Dr.42859 Zgc:165628 (LOC560054) zgc:165628 BCL11B
  Dr.29 Cyclin E (ccne) ccne CCNE1
  Dr.81131 Wu:fj43h12 (wu:fj43h12) wu:fj43h12 DPF2
  Dr.119569 Estrogen receptor 1 (esr1) esr1 ESR1
  Dr.13792 Zgc:55307 (zgc:55307) zgc:55307 NCOA4
  Dr.108093 Forkhead box P1a (foxp1a) foxp1a FOXP1
  Dr.79098 Methyl-CpG binding domain protein 1 (mbd1) mbd1 MBD1
  Dr.41031 Similar to MGC86299 protein (LOC564317) LOC564317 SMARCD2
  Dr.78256 Influenza virus NS1A binding protein a (ivns1abpa) ivns1abpa IVNS1ABP
  Dr.76084 Si:dkey-261h15.1 (LOC569156) Si:dkey-261h15.1 HIPK3
  Dr.81949 Zgc:77060 (zgc:77060) zgc:77060 NFIL3
4 d Dr.82517 Homeo box (H6 family) 3 (hmx3) hmx3 HMX3
  Dr.79439 NK2 transcription factor related, locus 9 (Drosophila) (nkx2.9) nkx2.9 NKX2-8
  Dr.132864 Wilms tumor 1a (wt1a) wt1a WT1
  Dr.78569 Zinc finger homeobox 1 (zfhx1) zfhx1 TCF8
  Dr.351 Retinoid × receptor, beta a (rxrba) rxrba RXRA
  Dr.334 Orthodenticle homolog 2 (otx2) otx2 OTX2
  Dr.8104 Nuclear receptor subfamily 6, group A, member 1a (nr6a1a) nr6a1a NR6A1
  Dr.83684 Iroquois homeobox protein 5 (irx5a) irx5a IRX5
  Dr.75342 Similar to sal-like 4 (sb:cb372) sall4 SALL4
7 d Dr.1467 Paired box gene 9 (pax9) pax9 PAX9
  Dr.77524 GATA-binding protein 3 (gata3) gata3 GATA3
  Dr.84720 Zgc:110646 (zgc:110646) zgc:110646 MED4
  Dr.132502 Homeo box B3a (hoxb3a) hoxb3a HOXB3
  Dr.119956 Zgc:103566 (zgc:103566) irf11 IRF1
  Dr.356 GATA-binding protein 2 (gata2) gata2 GATA2
  Dr.120105 Signal transduction and activation of transcription 1 (stat1) stat1a STAT1
  Dr.2 Distal-less homeobox gene 2a (dlx2a) dlx2a DLX2
  Dr.39148 Zgc:158606 (zgc:158606) zgc:158441 FBXL11
  Dr.75088 POU domain gene 50 (pou50) pou50 POU3F1
  Dr.80575 C20orf24 homolog (human) (c20orf24) c20orf24 C20orf24
  Dr.16181 Zgc:77260 (zgc:77260) zgc:77260 NR2F6
  Dr.78322 Similar to Epidermal Langerhans cell protein LCP1 (LOC559853) LOC559853 C14ORF92
  Dr.719 DR1-associated protein 1 (negative cofactor 2 alpha) (drap1) drap1 DRAP1
  Dr.7307 Metastasis associated 1 family, member 2 (mta2) mta2 MTA2
  Dr.21307 SET and MYND domain containing 1a (smyd1a) smyd1a SMYD1
  Dr.15663 CCAAT/enhancer binding protein (C/EBP), gamma (cebpg) cebpg CEBPG
14 d Dr.76961 Zgc:158157 (zgc:158157) zgc:158157 DIDO1
  Dr.6047 Zgc:73112 (zgc:73112) zgc:73112 PYCR1
  Dr.133831 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (ctdp1) ctdp1 CTDP1
  Dr.78697 Zgc:91808 (zgc:91808) rfx2 RFX2
  1. aThe closest human homologues with sequence similarity >45% are listed
  2. bArrows pointing up represent up-regulation and those pointing down represent down-regulation.