Skip to main content

Table 1 Summary statistics of the major rainbow trout Sanger-based EST projects

From: Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

Library Name Supplier Tissue/Organ # in TCs # of singletons Total ESTs
NCCCWA 1RT NCCCWA-USDA Pooled 34927 11452 46379
NCCCWA 02RT NCCCWA-USDA Pooled 14506 3452 17958
NCCCWA 03RT NCCCWA-USDA Pooled juvenile 17412 651 18063
NCCCWA 04RT NCCCWA-USDA Pooled juvenile 2198 407 2605
NCCCWA 05RT NCCCWA-USDA Pooled juvenile 1789 282 2071
NCCCWA 07RT NCCCWA-USDA Pituitary 3208 321 3529
NCCCWA 09RT NCCCWA-USDA Testis 4615 537 5152
NCCCWA 10RT#1-4 NCCCWA-USDA Oocyte 254 78 332
NCCCWA 10RT#2 NCCCWA-USDA Oocyte 147 19 166
NCCCWA 10RT#3 NCCCWA-USDA Oocyte 14594 3060 17654
NCCCWA 10RT#4 NCCCWA-USDA Oocyte 68 16 84
leuk NCCCWA-USDA Anterior kidney/spleen 6223 166 6389
EMB NCCCWA-USDA Embryo 3529 227 3756
AGENAE Rainbow trout multi-tissues library (tcaa) INRA - SCRIBE Adipose, blood, brain, gonad 863 256 1119
AGENAE Rainbow trout normalized testis library (tcab) INRA - SCRIBE Testis 730 294 1024
AGENAE Rainbow trout multi-tissues subtracted library (tcay) INRA - SCRIBE Adipose, blood, brain, gonad 17859 8433 26292
AGENAE Rainbow trout normalized ovarian library (tcby) INRA - SCRIBE Ovary 4714 204 4918
AGENAE Rainbow trout normalized multi-tissues library (tcac) INRA - SCRIBE Adipose, blood, brain, gonad 3265 713 3978
AGENAE Rainbow trout subtracted multi-tissues library (tcav) INRA - SCRIBE Adipose, blood, brain, gonad 2516 850 3366
Agenae (tcbj) INRA - SCRIBE   179 17 196
AGENAE Rainbow trout normalized multi-tissues library (tcad) INRA - SCRIBE Adipose, blood, brain, gonad 5015 1131 6146
AGENAE Rainbow trout normalized testis library (tcbi) INRA - SCRIBE Testis 11494 3603 15097
AGENAE Rainbow trout multi-tissues-normalized (tcbk) INRA - SCRIBE Multi-tissues 21132 5757 26889
AGENAE Rainbow trout multi-tissues library (tcce) INRA - SCRIBE Embryos to adults 6211 1664 7875
Oncorhynchus mykiss reproductive University of Victoria Gonads 5387 848 6235
Oncorhynchus mykiss Chilliwack River steelhead whole University of Victoria Whole embryo/juvenil 3760 246 4006
Oncorhynchus mykiss Tzenaicut Lake whole University of Victoria Whole embryo/juvenil 2266 188 2454
  1. Data from the National Center for Cool and Cold Water Aquaculture (NCCCWA-USDA) and the National Institute for Agricultural Research (INRA) constitute 47% and 37%, respectively.