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Table 1 Gene ontology (GO) term enrichment in the uterine transcriptome

From: Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg

Description

GO terms*

Enrichment

EASE score

Gene symbol

Mineral transport and ion transfer

F-0046933

7.91

0.00018

ATP5B, ATP6V1E1, ATP5A1, ATP5G1

 

P-0015986

7.69

0.00021

ATP5B, ATP6V1E1, ATP5A1, ATP5G1

 

F-0046961

6.50

0.00056

ATP5B, ATP6V1E1, ATP5A1, ATP5G1

 

F-0016820

7.80

0.00077

ATP5A1, ATP1A1, ATP2A2

 

P-0006811

3.21

0.00650

ATP5B, WNK1, P2RX4, ATP5A1, ATP1B1, GRIN1, ADD1, SCNN1A

 

C-0016469

5.80

0.00093

ATP5B, ATP6V1E1, ATP5A1, ATP5G1

 

P-0006814

5.49

0.01166

ATP1A1, SCNN1G, ATP1B1, SCNN1A

 

P-0006810

1.73

0.04275

ANT3, SLC6A8, CYC, HIAT1, ATP1A1, UQCRFS1, P2RX4, CLCN2, GLRB, ATP2C2, ENSA, HBB, GDA

Metal and calcium ions binding proteins

F-0046872

1.67

0.02991

ADD3, ATP5B, CYC, BRE1A, ATP5A1, HBB, PPP2CA, WDFY1, UQCRFS1, TYRP2, PEPD, HMOX1_CHICK, RCHY1, RNF114, ZC3H11A, ADD1, SOD1, DNAJA2, RPL37A

 

F-0005509

1.90

0.00701

DTNB, CANX, MAN1C1, ATP2A2, CALM1, MACF1, STAT3, HSP90B1, SLIT2, CALM2, SLIT3, NECAB3, CAMKK2, MEGF6, FKBP9, DSG2, NUCB2, ANXA2, CUBN, CLSTN3

Pyridoxal phosphate binding

F-0030170

4.46

0.01013

SGPL1, GOT1, YCBX

Protein translation and maturation

F-0005198

2.31

0.01017

ADD3, TUBB2C, GAG, TUBA1C, KRT8, TBB2, TBA5, ADD1, PNN, GFAP, ACTR1A

 

P-0051258

4.71

0.01998

TUBB2C, TUBA1C, TBB2, TBA5

 

C-0043234

3.05

0.02549

TUBA1C, TBB2, MYH9, TBA5, TUBB2C, CDCA8

Synaptic transmission

P-0007268

4.71

0.01998

NPTX2, GRIN1, PI4KA, STX1A

Endoplasmic reticulum

C-0005783

1.75

0.02295

INSIG1, CANX, PPGB, RTN3, NECAB3, CALR, ALG3, TTC35, ADFP, D17WSU104E, SCAP, SURF4, EMID1, PTPN1, HSP90B1, HSPA5, HMOX1

Lyase activity

F-0016829

3.32

0.03303

ACLY, SGPL1, ODC1, AMD1

Cytosol

C-0005829

1.72

0.03740

PIK3R1, MVD, PDCD6IP, PPP2CA, EZR, WDFY1, ODC1, OGT, CEP290, TRPC4AP, PACSIN2, HEBP1, MYH9, ARFGAP3, SEC14L2, NUCB2

Regulation of transcription

P-0045449

2.48

0.04107

PPP2CA, MAD4, STAT3, BTG1, MLX, ID2, FUSIP1

 

F-0000166

1.46

0.02473

ATP5B, GNAI2, CIRBP, MAPK06, GRP78, TBB2C, ATP5A1, HSPA8, ATP1A1, DDX5, TUBA1C, PRKAR1A, ATP2A2, HNRPH3, TUBB2C, PFKP, SGK1, TBB2C, ITPK1, SARS, ARF1, HNRPQ, MYH9, TRA2B, HNRPD, PPARGC1A, CKB, MTHFD1

  1. *GO term categories: Cellular component (C), Biological process (P) and Molecular function (F). GO term enrichment was analyzed using EASE software http://david.abcc.ncifcrf.gov/ease.
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BMC Genomics

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