Table 11 Alignments to 11,472 B. malayi peptides using BLASTX (e value < 1e-5) where > 80% of the protein was covered by a match, by pairs of assemblies merged using an OLC assembler
From: Comparing de novo assemblers for 454 transcriptome data
Assembly Pair | Â | % Peptides hit | % Peptide bases covered |
|---|---|---|---|
CLC | Newbler 2.5 | 38.2 | 28.3 |
MIRA | Newbler 2.5 | 37.3 | 27.4 |
CLC | MIRA | 37.1 | 27.1 |
CLC | Newbler 2.3 | 36.5 | 27.4 |
Newbler 2.5 | SeqMan | 36.5 | 26.8 |
CAP3 | Newbler 2.5 | 36.4 | 26.9 |
CAP3 | CLC | 36.1 | 26.3 |
CLC | SeqMan | 35.9 | 26.1 |
MIRA | SeqMan | 35.7 | 25.7 |
Newbler 2.3 | Newbler 2.5 | 35.3 | 26.3 |
CAP3 | SeqMan | 35.1 | 25.2 |
Newbler 2.3 | SeqMan | 34.4 | 25.6 |
CAP3 | MIRA | 34.0 | 24.2 |
CAP3 | Newbler 2.3 | 34.0 | 25.1 |
MIRA | Newbler 2.3 | 33.3 | 24.0 |