Table 6 BLASTX hits to 11,472 Brugia malayi proteins
From: Comparing de novo assemblers for 454 transcriptome data
| Â | CAP3 | CLC | MIRA | Newbler 2.3 | Newbler 2.5 | SeqMan |
|---|---|---|---|---|---|---|
% of proteins hit | 76.7 | 78.4 | 77.3 | 68.9* | 77.9 | 78.6 |
(% of bases covered) | (60.4) | (62.4) | (59.7) | (51.8)* | (61.5) | (63.0) |
% of protein hit by individual HSPs that cover 80% of target protein | 27.0 | 26.0 | 26.5 | 29.2 | 32.4 | 28.7 |
(% of bases covered) | (16.8) | (16.1) | (16.4) | (19.9) | (22.3) | (18.0) |