Comparing de novo assemblers for 454 transcriptome data

BMC Genomics

Table 7 BLASTX hits to 3,681 tribes containing 120,926 conserved nematode proteins

	CAP3	CLC	MIRA	Newbler 2.3	Newbler 2.5	SeqMan
% of unique tribes hit	91.7	92.2	91.4	87.0*	92.0	92.4
% of unique tribes hit where individual HSPs covered 80% of target protein	81.7	81.1	78.9	77.1*	82.1	81.6

Note: E-value cutoff 1e-5
* indicates a value significantly lower than the others (p < 0.01), using a Huber M-estimator.

ISSN: 1471-2164