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Table 3 Varying assembly parameters affects the length, number of scaffolds, and Sp185/333 genes present in different assemblies

From: An Sp185/333 gene cluster from the purple sea urchin and putative microsatellite-mediated gene diversification

     Sp185/333
Assembly1 Unitigger rate (%) Length (nt)2 Scaffolds Genes Gene Fragments
2 0.2 111,226 5 4 2
3 0.3 120,165 4 5 3
4 0.4 113,898 3 5 1
5 0.5 117,017 2 5 1
6 0.6 110,951 2 4 1
7 0.7 116,484 3 5 1
8 0.8 115,649 2 5 1
9 0.9 117,014 2 5 1
10 1.0 117,098 3 5 1
11 1.1 115,591 3 4 2
12 1.2 116,615 3 4 2
15 1.5 115,620 4 4 2
BCM-HGSC3 n/a 119,341 1 6 0
  1. 1Assemblies 2-15 were generated with the Celera Assembler [33].
  2. 2excluding gaps
  3. 3The sequence completed by BCM-HGSC (Genbank: AC204781.3) was assembled using Phrap [40] and Atlas [41].