Chromosomal arm | Total no. informative SNPs with LOH | No. informative SNPs with LOH and CN = 1 (fraction) | No. informative SNPs with LOH and CN = 2 (fraction) | No. informative SNPs with LOH and CN = 3 or 4 (fraction) |
---|---|---|---|---|
1p | 10,576 | 2,930 (0.28) | 6,522 (0.62) | 1,124 (0.11) |
1q | 8,366 | 459 (0.05) | 7,674 (0.92) | 233 (0.03) |
2p | 11,321 | 371 (0.03) | 10,770 (0.95) | 180 (0.02) |
2q | 23,115 | 3,015 (0.13) | 18,939 (0.82) | 1,161 (0.05) |
3p | 27,593 | 15,335 (0.56) | 12,064 (0.44) | 194 (0.01) |
3q | 7,256 | 41 (0.01) | 4,168 (0.57) | 3,047 (0.42) |
4p | 12,223 | 4,771 (0.39) | 7,452 (0.61) | 0 (0) |
4q | 28,105 | 9,142 (0.33) | 17,905 (0.64) | 1,958 (0.04) |
5p | 1,315 | 0 (0) | 1,259 (0.96) | 56 (0.04) |
5q | 16,537 | 7,744 (0.47) | 8,777 (0.53) | 16 (0) |
6p | 5,622 | 342 (0.06) | 4,870 (0.87) | 410 (0.07) |
6q | 3,365 | 165 (0.05) | 2,773 (0.82) | 427 (0.13) |
7p | 7,389 | 9 (0) | 5,491 (0.74) | 1,889 (0.26) |
7q | 8,001 | 151 (0.02) | 6,452 (0.74) | 1,398 (0.17) |
8p | 8,803 | 1,580 (0.18) | 6,234 (0.71) | 989 (0.11) |
8q | 17,321 | 47 (0) | 4,633 (0.27) | 12,641 (0.74) |
9p | 18,292 | 2,772 (0.15) | 13,333 (0.73) | 2,187 (0.12) |
9q | 31,400 | 1,965 (0.06) | 27,212 (0.87) | 2,223 (0.07) |
10p | 2,739 | 472 (0.17) | 2,063 (0.75) | 204 (0.07) |
10q | 14,651 | 1,728 (0.12) | 12,075 (0.82) | 848 (0.06) |
11p | 9,391 | 2,367 (0.25) | 6,902 (0.73) | 122 (0.01) |
11q | 17,377 | 5,116 (0.29) | 10,422 (0.60) | 1,839 (0.11) |
12p | 5,229 | 156 (0.03) | 3,251 (0.62) | 1,822 (0.34) |
12q | 6,794 | 67 (0.01) | 5,980 (0.88) | 747 (0.11) |
13q | 35,648 | 5,897 (0.17) | 25,964 (0.73) | 3,787 (0.11) |
14q | 10,931 | 1,484 (0.14) | 7,446 (0.68) | 2,001 (0.18) |
15q | 10,194 | 685 (0.07) | 8,313 (0.82) | 1,196 (0.12) |
16p | 1,395 | 111 (0.08) | 1,284 (0.92) | 0 (0) |
16q | 3,127 | 1 (0) | 2,832 (0.91) | 294 (0.09) |
17p | 7,719 | 324 (0.04) | 6,939 (0.90) | 456 (0.06) |
17q | 16,328 | 38 (0) | 14,754 (0.90) | 1,536 (0.09) |
18p | 2,596 | 488 (0.19) | 1,147 (0.44) | 961 (0.37) |
18q | 9,978 | 3,108 (0.31) | 6,838 (0.69) | 32 (0) |
19p | 1,069 | 1 (0) | 1,065 (1.00) | 3 (0) |
19q | 3,505 | 932 (0.27) | 2,482 (0.71) | 91 (0.03) |
20p | 1,278 | 0 (0) | 229 (0.18) | 1,049 (0.82) |
20q | 1,773 | 60 (0.03) | 1,677 (0.95) | 36 (0.02) |
21q | 9,444 | 3,825 (0.41) | 5,599 (0.59) | 20 (0) |
22q | 4,177 | 621 (0.15) | 3,274 (0.80) | 222 (0.05) |
Range (fraction SNPs with LOH) | 0-0.56 | 0.18-1.00 | 0-0.82 | |
Median (fraction SNPs with LOH) | 0.05 | 0.71 | 0.05 | |
Global average (fraction SNPs with LOH) | 0.19 | 0.70 | 0.11 |