Table 1 Description of the influenza A virus sequences tiled on the PathogenID v2.0 microarray
Gene | Viral sequence identification | Position | Fragment size (bp) |
|---|---|---|---|
M | Influenza genus identification | 7..225 | 218 |
PB2 | AY651706_human_H5N1_A/Dk/Indonesia/MS/2004 | 20..572 | 552 |
| Â | AF258839_human_H5N1_A/Hong_kong/483/97 | 34..586 | 552 |
| Â | CY005844_Avian_H5N2_A/Chicken/Chis/15224/1997 | 35..587 | 552 |
| Â | CY005008_Avian_H8N4_A/mallard/Alberta/194/1992 | 35..587 | 552 |
| Â | CY007810_human_H3N2_A/Canterbury/02/2005 | 24..576 | 552 |
HA | H1_Major_group_1 | 1512..1730 | 218 |
| Â | H1_Major_group_2 | 1516..1741 | 225 |
| Â | H1_Minor_group_3 | 1527..1720 | 193 |
| Â | H2_Major_group_1 | 1018..1238 | 220 |
| Â | H2_Minor_group_2 | 1070..1278 | 208 |
| Â | H3_Major_group_1 | 1478..1710 | 232 |
| Â | H3_Major_group_2 | 1515..1746 | 231 |
| Â | H5_Major_1 | 1251..1451 | 200 |
| Â | H7_Major_group_1 | 1496..1686 | 190 |
| Â | H7_Major_group_1 | 750..940 | 190 |
| Â | H9_Group_1 | 698..868 | 170 |
| Â | H9_Group_2 | 1226..1423 | 197 |
NA | N1_Major_group_1 | 408..689 | 281 |
| Â | N1_Minor_group_2 | 471..722 | 251 |
| Â | N1_Minor_group_2 | 347..580 | 233 |
| Â | N2_Group_1 | 246..486 | 240 |
| Â | N2_Group_2 | 1211..1410 | 199 |
| Â | N2_Group_3 | 459..693 | 234 |
| Â | N7_Group_1 | 560..760 | 200 |
| Â | N7_Group_2 | 871..1069 | 198 |
| Â | N7_Group_3 | 1180..1378 | 198 |