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Table 1 Description of the influenza A virus sequences tiled on the PathogenID v2.0 microarray

From: Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm

Gene Viral sequence identification Position Fragment size (bp)
M Influenza genus identification 7..225 218
PB2 AY651706_human_H5N1_A/Dk/Indonesia/MS/2004 20..572 552
  AF258839_human_H5N1_A/Hong_kong/483/97 34..586 552
  CY005844_Avian_H5N2_A/Chicken/Chis/15224/1997 35..587 552
  CY005008_Avian_H8N4_A/mallard/Alberta/194/1992 35..587 552
  CY007810_human_H3N2_A/Canterbury/02/2005 24..576 552
HA H1_Major_group_1 1512..1730 218
  H1_Major_group_2 1516..1741 225
  H1_Minor_group_3 1527..1720 193
  H2_Major_group_1 1018..1238 220
  H2_Minor_group_2 1070..1278 208
  H3_Major_group_1 1478..1710 232
  H3_Major_group_2 1515..1746 231
  H5_Major_1 1251..1451 200
  H7_Major_group_1 1496..1686 190
  H7_Major_group_1 750..940 190
  H9_Group_1 698..868 170
  H9_Group_2 1226..1423 197
NA N1_Major_group_1 408..689 281
  N1_Minor_group_2 471..722 251
  N1_Minor_group_2 347..580 233
  N2_Group_1 246..486 240
  N2_Group_2 1211..1410 199
  N2_Group_3 459..693 234
  N7_Group_1 560..760 200
  N7_Group_2 871..1069 198
  N7_Group_3 1180..1378 198
  1. Positions and sizes of the consensus HA and NA sequences were determined and selected after BLASTN analysis of the sequence.