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Table 2 Resequencing microarray output for identification and characterisation of the 12 influenza A viral RNAs

From: Use of consensus sequences for the design of high density resequencing microarrays: the influenza virus paradigm

Origin Tested strain Identification Genes Call rate (%) Time range Median
   Typing Subtyping Genotyping    
Swine    H3N2 PB2 76.2 1981 - 1987 1984
  A/swine/Gent/1/84 (H3N2) A   H 94.3 1984 1984
     N 92.6 1984 1984
    H1N2 PB2 60.3 1999 1999
  A/swine/Gent/7625/99 (H1N2) A   H 88.8 2000 2000
     N 81.2 1999 1999
Human    H3N2 PB2 35.5 1972 - 1982 1975
  A/Victoria/3/75 (H3N2) A   H 89.9 1968 - 1975 1974
     N 84.6 1968 - 2005 1975
    H3N2 PB2 67.9 1988 - 1994 1993
  A/Johannesburg/33/1994 (H3N2) A   H 80.4 1988 - 1999 1993
     N 80.7 1993 - 2008 2008
    H3N2 PB2 93.4 2000 - 2006 2003
  A/Wyoming/3/2003 (H3N2) A   H 89.9 2002 - 2003 2003
     N 85.8 2001 - 2008 2006
Equine    H7N7 PB2 60.7 1956 1956
  A/equine/Prague/1/56 (H7N7) A   H 48.5 1975 - 2008 2004
     N 100 1956 - 1992 1974
    H3Nx PB2 60.3 1972 1972
  A/equine/Miami/1/63 (H3N8) A   H 65.6 1963 - 2007 1987
     N - - -
    H3Nx PB2 64.3 1978-1980 1979
  A/equine/Fontainebleau/1/79 (H3N8) A   H 57.4 1974 - 2008 1992
     N - - -
    H3Nx PB2 67.3 1976 - 1994 1989
  A/equine/Grosbois/99 (H3N8) A   H 69.4 1976 - 2006 1986
     N - - -
Avian    H3N2 PB2 77.3 2005 2005
  Viral strain 221 A   H 84.7 2006 2006
     N 99.4 2004 2004
    H1N1 PB2 93 2006 2006
  Viral strain 223 A   H 66.5 1976 1976
     N 90.7 2006 - 2007 2007
   A H1N1 PB2 97.4 2006 2006
  Viral strain 224    H 81.8 2003 - 2007 2006
     N 94.9 2001 2001
  1. The call rate is the percentage of bases determined by the resequencing algorithm. Time ranges indicate the oldest isolate with high homology provided by the BLASTN algorithm and the most recent one. The medians were calculated based upon the sequences showing the highest alignment scores.