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Table 2 Selected genes up-regulated in tendril tip cells

From: Gene expression in Pseudomonas aeruginosa swarming motility

Gene number Gene name Product name Tip vs. non-swarming fold change (log2)
Transcriptional regulators  
PA09612   probable cold-shock protein 1.5
PA54031   probable transcriptional regulator 1.9
PA5550 glmR GlmR transcriptional regulator 1.6
Energy metabolism  
PA1552 ccoP1 probable cytochrome c 1.9
PA1553 ccoO1 probable cytochrome c oxidase subunit 2.1
PA1554 ccoN1 probable cytochrome oxidase subunit (cbb3-type) 1.7
PA41332   cytochrome c oxidase subunit (cbb3-type) 2.9
PA4429 petC probable cytochrome c1 precursor 2.0
PA4430 petB probable cytochrome b 2.0
PA4431 petA probable iron-sulfur protein 1.5
PA5553 atpC ATP synthase epsilon chain 1.5
PA5554 atpD ATP synthase beta chain 1.9
PA5555 atpG ATP synthase gamma chain 1.7
PA5556* atpA ATP synthase alpha chain 1.4
PA5557* atpH ATP synthase delta chain 1.3
PA5558* atpF ATP synthase B chain 1.3
PA5559* atpE ATP synthase C chain 1.3
PA5560 atpB ATP synthase A chain 1.8
PA5561* atpI ATP synthase protein I 1.3
Protein secretion/export apparatus  
PA3821 secD secretion protein SecD 1.6
PA3820 secF secretion protein SecF 1.6
PA5568 yidC Preprotein translocase subunit YidC 1.7
Transport of small molecules  
PA35311 bfrB bacterioferritin 2.7
PA46161   probable c4-dicarboxylate-binding protein 2.2
PA3187 gltK probable ATP-binding component of ABC transporter 1.5
PA3188 gltG probable permease of ABC sugar transporter 2.0
PA4628 lysP lysine-specific permease 1.7
PA5479 gltP proton-glutamate symporter 1.6
PA07823 putA proline dehydrogenase 1.8
PA07831 putP sodium/proline symporter PutP 1.6
PA47701 lldP L-lactate permease 1.5
Translation, post-translational modification, degradation  
PA0579 rpsU 30S ribosomal protein S21 1.5
PA2619 infA initiation factor 1.8
PA2851 efp translation elongation factor P 1.8
PA36551 tsf elongation factor Ts 1.7
PA3742 rplS 50S ribosomal protein L19 1.8
PA4255 rpmC 50S ribosomal protein L29 1.7
PA44321 rpsI 30S ribosomal protein S9 1.8
PA4567 rpmA 50S ribosomal protein L27 1.5
PA4672   peptidyl-tRNA hydrolase 1.7
PA5049 rpmE 50S ribosomal protein L31 1.6
  1. 1: Genes up-regulated in tendril tip vs. NS and up-regulated in tendril tip vs. center.
  2. 2: Genes up-regulated in tendril tip vs. NS and up-regulated in swarm center vs. NS.
  3. 3: putA was significantly up-regulated in tip cells vs. swarm center, but not tip cells vs. NS.
  4. *: Genes up-regulated in tendril tip vs. NS only and expressed more than 1.3 log2-fold). Genes kept in our analysis since they are part of an operon or in certain cases, a pertinent cluster.