Table 2 Frequent species - GO terms associations
From: Gene duplications in prokaryotes can be associated with environmental adaptation
Bacteroides thetaiotaomicron VPI-5482 (Bacteroidetes/Chlorobi) | ||
|---|---|---|
GO:0005976 | 26 | polysaccharide metabolic process |
GO:0005975 | 21 | carbohydrate metabolic process |
GO:0044275 | 21 | cellular carbohydrate catabolic process |
GO:0000272 | 20 | polysaccharide catabolic process |
GO:0006027 | 20 | glycosaminoglycan catabolic process |
GO:0009253 | 20 | peptidoglycan catabolic process |
GO:0016052 | 18 | carbohydrate catabolic process |
GO:0044265 | 16 | cellular macromolecule catabolic process |
GO:0044262 | 15 | cellular carbohydrate metabolic process |
GO:0030312 | 11 | external encapsulating structure |
GO:0009279 | 7 | cell outer membrane |
GO:0031975 | 7 | envelope |
GO:0016301 | 5 | kinase activity |
GO:0016811 | 5 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides |
GO:0016853 | 5 | isomerase activity |
GO:0019867 | 5 | outer membrane |
GO:0030313 | 5 | cell envelope |
GO:0044462 | 5 | external encapsulating structure part |
GO:0004871 | 4 | signal transducer activity |
GO:0060089 | 4 | molecular transducer activity |
GO:0016020 | 3 | membrane |
GO:0008643 | 2 | carbohydrate transport |
Methylibium petroleiphilum PM1 (Betaproteobacteria) | ||
GO:0051186 | 5 | cofactor metabolic process |
GO:0006766 | 4 | vitamin metabolic process |
GO:0006767 | 4 | water-soluble vitamin metabolic process |
GO:0046483 | 4 | heterocycle metabolic process |
GO:0009235 | 3 | cobalamin metabolic process |
GO:0009236 | 3 | cobalamin biosynthetic process |
GO:0006778 | 2 | porphyrin metabolic process |
GO:0006779 | 2 | porphyrin biosynthetic process |
GO:0009110 | 2 | vitamin biosynthetic process |
GO:0033013 | 2 | tetrapyrrole metabolic process |
GO:0033014 | 2 | tetrapyrrole biosynthetic process |
GO:0042364 | 2 | water-soluble vitamin biosynthetic process |
GO:0051188 | 2 | cofactor biosynthetic process |
Nitrobacter hamburgensis X14 (Alphaproteobacteria) | ||
GO:0043167 | 10 | ion binding |
GO:0043169 | 10 | cation binding |
GO:0046872 | 10 | metal ion binding |
GO:0046914 | 8 | transition metal ion binding |
GO:0042126 | 6 | nitrate metabolic process |
GO:0005507 | 5 | copper ion binding |
GO:0008940 | 5 | nitrate reductase activity |
GO:0009325 | 5 | nitrate reductase complex |
GO:0016661 | 4 | oxidoreductase activity, acting on other nitrogenous compounds as donors |
GO:0004129 | 3 | cytochrome-c oxidase activity |
GO:0015002 | 3 | heme-copper terminal oxidase activity |
GO:0016675 | 3 | oxidoreductase activity, acting on heme group of donors |
GO:0016676 | 3 | oxidoreductase activity, acting on heme group of donors, oxygen as acceptor |
GO:0020037 | 3 | heme binding |
Nostoc punctiforme PCC 73102 (Cyanobacteria) | ||
GO:0015979 | 11 | photosynthesis |
GO:0030076 | 9 | light-harvesting complex |
GO:0042716 | 9 | plasma membrane-derived chromatophore |
GO:0031410 | 8 | cytoplasmic vesicle |
GO:0031982 | 8 | vesicle |
GO:0032991 | 8 | macromolecular complex |
GO:0044433 | 7 | cytoplasmic vesicle part |
GO:0019684 | 5 | photosynthesis, light reaction |
GO:0043234 | 4 | protein complex |
GO:0009767 | 3 | photosynthetic electron transport chain |
GO:0009772 | 3 | photosynthetic electron transport in photosystem II |
GO:0030077 | 3 | plasma membrane light-harvesting complex |
Polaromonas naphthalenivorans CJ2 (Betaproteobacteria) | ||
GO:0006281 | 5 | DNA repair |
GO:0006974 | 5 | response to DNA damage stimulus |
GO:0034984 | 5 | cellular response to DNA damage stimulus |
GO:0033554 | 4 | cellular response to stress |
GO:0051716 | 4 | cellular response to stimulus |
GO:0006950 | 2 | response to stress |
GO:0043565 | 2 | sequence-specific DNA binding |