TY - JOUR AU - Jasinska, A. J. AU - Service, S. AU - Choi, O. W. AU - DeYoung, J. AU - Grujic, O. AU - Kong, S. Y. AU - Jorgensen, M. J. AU - Bailey, J. AU - Breidenthal, S. AU - Fairbanks, L. A. PY - 2009 DA - 2009// TI - Identification of brain transcriptional variation reproduced in peripheral blood: an approach for mapping brain expression traits JO - Hum Mol Genet VL - 18 UR - https://doi.org/10.1093/hmg/ddp397 DO - 10.1093/hmg/ddp397 ID - Jasinska2009 ER - TY - JOUR AU - Sullivan, P. F. AU - Fan, C. AU - Perou, C. M. PY - 2006 DA - 2006// TI - Evaluating the comparability of gene expression in blood and brain JO - Am J Med Genet B Neuropsychiatr Genet VL - 141B UR - https://doi.org/10.1002/ajmg.b.30272 DO - 10.1002/ajmg.b.30272 ID - Sullivan2006 ER - TY - JOUR AU - Gladkevich, A. AU - Kauffman, H. F. AU - Korf, J. PY - 2004 DA - 2004// TI - Lymphocytes as a neural probe: potential for studying psychiatric disorders JO - Prog Neuropsychopharmacol Biol Psychiatry VL - 28 UR - https://doi.org/10.1016/j.pnpbp.2004.01.009 DO - 10.1016/j.pnpbp.2004.01.009 ID - Gladkevich2004 ER - TY - JOUR AU - Glatt, S. J. AU - Everall, I. P. AU - Kremen, W. S. AU - Corbeil, J. AU - Sasik, R. AU - Khanlou, N. AU - Han, M. AU - Liew, C. C. AU - Tsuang, M. T. PY - 2005 DA - 2005// TI - Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0507666102 DO - 10.1073/pnas.0507666102 ID - Glatt2005 ER - TY - JOUR AU - Matigian, N. A. AU - McCurdy, R. D. AU - FĂ©ron, F. o. AU - Perry, C. AU - Smith, H. AU - Filippich, C. AU - McLean, D. AU - McGrath, J. AU - Mackay-Sim, A. AU - Mowry, B. PY - 2008 DA - 2008// TI - Fibroblast and Lymphoblast Gene Expression Profiles in Schizophrenia: Are Non-Neural Cells Informative? JO - PLoS ONE VL - 3 UR - https://doi.org/10.1371/journal.pone.0002412 DO - 10.1371/journal.pone.0002412 ID - Matigian2008 ER - TY - JOUR AU - Tsuang, M. T. AU - Nossova, N. AU - Yager, T. AU - Tsuang, M. M. AU - Guo, S. C. AU - Shyu, K. G. AU - Glatt, S. J. AU - Liew, C. C. PY - 2005 DA - 2005// TI - Assessing the validity of blood-based gene expression profiles for the classification of schizophrenia and bipolar disorder: a preliminary report JO - Am J Med Genet B Neuropsychiatr Genet VL - 133B UR - https://doi.org/10.1002/ajmg.b.30161 DO - 10.1002/ajmg.b.30161 ID - Tsuang2005 ER - TY - JOUR AU - Saris, C. G. AU - Horvath, S. AU - van Vught, P. W. AU - van Es, M. A. AU - Blauw, H. M. AU - Fuller, T. F. AU - Langfelder, P. AU - DeYoung, J. AU - Wokke, J. H. AU - Veldink, J. H. PY - 2009 DA - 2009// TI - Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-405 DO - 10.1186/1471-2164-10-405 ID - Saris2009 ER - TY - JOUR AU - Borovecki, F. AU - Lovrecic, L. AU - Zhou, J. AU - Jeong, H. AU - Then, F. AU - Rosas, H. D. AU - Hersch, S. M. AU - Hogarth, P. AU - Bouzou, B. AU - Jensen, R. V. PY - 2005 DA - 2005// TI - Genome-wide expression profiling of human blood reveals biomarkers for Huntington's disease JO - Proc Natl Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0504921102 DO - 10.1073/pnas.0504921102 ID - Borovecki2005 ER - TY - JOUR AU - Maes, O. C. AU - Xu, S. AU - Yu, B. AU - Chertkow, H. M. AU - Wang, E. AU - Schipper, H. M. PY - 2007 DA - 2007// TI - Transcriptional profiling of Alzheimer blood mononuclear cells by microarray JO - Neurobiol Aging VL - 28 UR - https://doi.org/10.1016/j.neurobiolaging.2006.08.004 DO - 10.1016/j.neurobiolaging.2006.08.004 ID - Maes2007 ER - TY - JOUR AU - Presson, A. AU - Sobel, E. AU - Papp, J. AU - Suarez, C. AU - Whistler, T. AU - Rajeevan, M. AU - Vernon, S. AU - Horvath, S. PY - 2008 DA - 2008// TI - Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome JO - BMC Systems Biology VL - 2 UR - https://doi.org/10.1186/1752-0509-2-95 DO - 10.1186/1752-0509-2-95 ID - Presson2008 ER - TY - JOUR AU - Oldham, M. C. AU - Horvath, S. AU - Geschwind, D. H. PY - 2006 DA - 2006// TI - Conservation and evolution of gene coexpression networks in human and chimpanzee brains JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0605938103 DO - 10.1073/pnas.0605938103 ID - Oldham2006 ER - TY - JOUR AU - Oldham, M. C. AU - Konopka, G. AU - Iwamoto, K. AU - Langfelder, P. AU - Kato, T. AU - Horvath, S. AU - Geschwind, D. H. PY - 2008 DA - 2008// TI - Functional organization of the transcriptome in human brain JO - Nat Neurosci VL - 11 UR - https://doi.org/10.1038/nn.2207 DO - 10.1038/nn.2207 ID - Oldham2008 ER - TY - JOUR AU - Miller, J. A. AU - Oldham, M. C. AU - Geschwind, D. H. PY - 2008 DA - 2008// TI - A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging JO - J Neurosci VL - 28 UR - https://doi.org/10.1523/JNEUROSCI.4098-07.2008 DO - 10.1523/JNEUROSCI.4098-07.2008 ID - Miller2008 ER - TY - JOUR AU - Calvano, S. E. AU - Xiao, W. AU - Richards, D. R. AU - Felciano, R. M. AU - Baker, H. V. AU - Cho, R. J. AU - Chen, R. O. AU - Brownstein, B. H. AU - Cobb, J. P. AU - Tschoeke, S. K. PY - 2005 DA - 2005// TI - A network-based analysis of systemic inflammation in humans JO - Nature VL - 437 UR - https://doi.org/10.1038/nature03985 DO - 10.1038/nature03985 ID - Calvano2005 ER - TY - JOUR AU - Hodges, A. AU - Strand, A. D. AU - Aragaki, A. K. AU - Kuhn, A. AU - Sengstag, T. AU - Hughes, G. AU - Elliston, L. A. AU - Hartog, C. AU - Goldstein, D. R. AU - Thu, D. PY - 2006 DA - 2006// TI - Regional and cellular gene expression changes in human Huntington's disease brain JO - Hum Mol Genet VL - 15 UR - https://doi.org/10.1093/hmg/ddl013 DO - 10.1093/hmg/ddl013 ID - Hodges2006 ER - TY - JOUR AU - Iwamoto, K. AU - Bundo, M. AU - Kato, T. PY - 2005 DA - 2005// TI - Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis JO - Hum Mol Genet VL - 14 UR - https://doi.org/10.1093/hmg/ddi022 DO - 10.1093/hmg/ddi022 ID - Iwamoto2005 ER - TY - JOUR AU - Ryan, M. M. AU - Lockstone, H. E. AU - Huffaker, S. J. AU - Wayland, M. T. AU - Webster, M. J. AU - Bahn, S. PY - 2006 DA - 2006// TI - Gene expression analysis of bipolar disorder reveals downregulation of the ubiquitin cycle and alterations in synaptic genes JO - Mol Psychiatry VL - 11 UR - https://doi.org/10.1038/sj.mp.4001875 DO - 10.1038/sj.mp.4001875 ID - Ryan2006 ER - TY - JOUR AU - van der Merwe, P. A. AU - McNamee, P. N. AU - Davies, E. A. AU - Barclay, A. N. AU - Davis, S. J. PY - 1995 DA - 1995// TI - Topology of the CD2-CD48 cell-adhesion molecule complex: implications for antigen recognition by T cells JO - Curr Biol VL - 5 UR - https://doi.org/10.1016/S0960-9822(95)00019-4 DO - 10.1016/S0960-9822(95)00019-4 ID - van der Merwe1995 ER - TY - JOUR AU - Horvath, S. AU - Zhang, B. AU - Carlson, M. AU - Lu, K. V. AU - Zhu, S. AU - Felciano, R. M. AU - Laurance, M. F. AU - Zhao, W. AU - Qi, S. AU - Chen, Z. PY - 2006 DA - 2006// TI - Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0608396103 DO - 10.1073/pnas.0608396103 ID - Horvath2006 ER - TY - JOUR AU - Langfelder, P. AU - Horvath, S. PY - 2008 DA - 2008// TI - WGCNA: an R package for weighted correlation network analysis JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-559 DO - 10.1186/1471-2105-9-559 ID - Langfelder2008 ER - TY - CHAP AU - Zhang, B. AU - Horvath, S. PY - 2005 DA - 2005// TI - A general framework for weighted gene co-expression network analysis BT - Stat Appl Genet Mol Biol ID - Zhang2005 ER - TY - JOUR AU - Goring, H. H. AU - Curran, J. E. AU - Johnson, M. P. AU - Dyer, T. D. AU - Charlesworth, J. AU - Cole, S. A. AU - Jowett, J. B. AU - Abraham, L. J. AU - Rainwater, D. L. AU - Comuzzie, A. G. PY - 2007 DA - 2007// TI - Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng2119 DO - 10.1038/ng2119 ID - Goring2007 ER - TY - JOUR AU - Johnson, W. E. AU - Li, C. AU - Rabinovic, A. PY - 2007 DA - 2007// TI - Adjusting batch effects in microarray expression data using empirical Bayes methods JO - Biostatistics VL - 8 UR - https://doi.org/10.1093/biostatistics/kxj037 DO - 10.1093/biostatistics/kxj037 ID - Johnson2007 ER - TY - JOUR AU - Ghazalpour, A. AU - Doss, S. AU - Zhang, B. AU - Plaisier, C. AU - Wang, S. AU - Schadt, E. AU - Drake, T. A. AU - Lusis, A. AU - Horvath, S. PY - 2006 DA - 2006// TI - Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight JO - PLoS Genet VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020130 DO - 10.1371/journal.pgen.0020130 ID - Ghazalpour2006 ER - TY - JOUR AU - Langfelder, P. AU - Horvath, S. PY - 2007 DA - 2007// TI - Eigengene networks for studying the relationships between co-expression modules JO - BMC Syst Biol VL - 1 UR - https://doi.org/10.1186/1752-0509-1-54 DO - 10.1186/1752-0509-1-54 ID - Langfelder2007 ER - TY - JOUR AU - Horvath, S. AU - Dong, J. PY - 2008 DA - 2008// TI - Geometric interpretation of gene coexpression network analysis JO - PLoS Comput Biol VL - 4 UR - https://doi.org/10.1371/journal.pcbi.1000117 DO - 10.1371/journal.pcbi.1000117 ID - Horvath2008 ER - TY - STD TI - Torkamani A, Dean B, Schork NJ, Thomas EA: Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia. Genome Research. 20 (4): 403-412. 10.1101/gr.101956.109. ID - ref27 ER - TY - STD TI - Davies MN, Lawn S, Whatley S, Fernandes C, Williams RW, Schalkwyk LC: To what extent is blood a reasonable surrogate for brain in gene expression studies: estimation from mouse hippocampus and spleen. Frontiers in Neurogenomics. 2009, 3 (54): ID - ref28 ER - TY - JOUR AU - Keller, M. P. AU - Choi, Y. AU - Wang, P. AU - Davis, D. B. AU - Rabaglia, M. E. AU - Oler, A. T. AU - Stapleton, D. S. AU - Argmann, C. AU - Schueler, K. L. AU - Edwards, S. PY - 2008 DA - 2008// TI - A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility JO - Genome Res VL - 18 UR - https://doi.org/10.1101/gr.074914.107 DO - 10.1101/gr.074914.107 ID - Keller2008 ER - TY - JOUR AU - Stuart, J. M. AU - Segal, E. AU - Koller, D. AU - Kim, S. K. PY - 2003 DA - 2003// TI - A gene-coexpression network for global discovery of conserved genetic modules JO - Science VL - 302 UR - https://doi.org/10.1126/science.1087447 DO - 10.1126/science.1087447 ID - Stuart2003 ER - TY - JOUR AU - Dong, J. AU - Horvath, S. PY - 2007 DA - 2007// TI - Understanding network concepts in modules JO - BMC Syst Biol VL - 1 UR - https://doi.org/10.1186/1752-0509-1-24 DO - 10.1186/1752-0509-1-24 ID - Dong2007 ER - TY - JOUR AU - Mason, M. AU - Fan, G. AU - Plath, K. AU - Zhou, Q. AU - Horvath, S. PY - 2009 DA - 2009// TI - Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-327 DO - 10.1186/1471-2164-10-327 ID - Mason2009 ER - TY - JOUR AU - Yip, A. M. AU - Horvath, S. PY - 2007 DA - 2007// TI - Gene network interconnectedness and the generalized topological overlap measure JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-22 DO - 10.1186/1471-2105-8-22 ID - Yip2007 ER - TY - JOUR AU - Li, A. AU - Horvath, S. PY - 2007 DA - 2007// TI - Network neighborhood analysis with the multi-node topological overlap measure JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btl581 DO - 10.1093/bioinformatics/btl581 ID - Li2007 ER - TY - JOUR AU - Langfelder, P. AU - Zhang, B. AU - Horvath, S. PY - 2008 DA - 2008// TI - Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm563 DO - 10.1093/bioinformatics/btm563 ID - Langfelder2008 ER -