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Table 1 Enterobacterial Genome Sequences

From: High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis

Genus Species Isolate Patho-/Serotype Genbank-ID Reference
Part A - Reference genomes
Escherichia coli K-12 MG1655 non-pathogenic U00096.2 [70]
   K-12 W3110 non-pathogenic AP009048.1 [71]
   Nissle 1917 commensal -- --
   O9 HS commensal CP000802.1 [35]
   536 UPEC CP000247.1 [72]
   UTI89 UPEC CP000243.1 [73]
   CFTO73 UPEC AE014075.1 [74]
   O157:H7 EDL933 EHEC AE005174.2 [75]
   O157:H7 Sakai EHEC BA000007.2 [76]
   O42 EAEC N554766 [77]
   E2348-69 EPEC FM180568 [78]
   APEC O1 APEC CP000468.1 [79]
   789 APEC -- --
Shigella flexneri 2a 301 2a AE005674.1 [80]
   5b 8401 5b CP000266.1 [81]
   2a 2457T 2a AE014073.1 [82]
  dysenteriae Sd197 1 CP000034.1 [83]
  sonnei Ss046 1 CP000038.1 [83]
  boydii Sb227 4 CP000036.1 [83]
Klebsiella pneumoniae MGH78578   CP000647.1 [84]
Salmonella enterica Paratyphi ATCC9150 A CP000026.1 [85]
   Choleraesuis SC-B57 C1 AE017220.1 [86]
   Typhi Ty2 D1 AE014613.1 [87]
   Typhi CT18 D1 AL513382.1 [88]
  typhimurium LT2 B AE006468.1 [89]
  bongori 12419 -- -- Sanger Institute
Yersinia pestis CO92 Orientalis AL590842.1 [90]
   KIM Medievalis AE009952.1 [91]
   91001 Microtus AE017042.1 [92]
   Antiqua Antiqua CP000308.1 [93]
   Nepal516 -- CP000305.1 [93]
  pseudotuberculosis IP32953 -- CP000720.1 [33]
  enterocolitica 8081 -- AM286415.1 [94]
Part B - Recently published genomes
Escherichia coli DH10B non-pathogenic CP000948.1 [95]
   ED1a non-pathogenic CU928162.2 Genoscope C.E.A.
   SE11 non-pathogenic AP009240.1 [96]
   ATCC8739 non-pathogenic CP000946.1 Joint Genome Institute
   IAI1 non-pathogenic CU928160.2 Genoscope C.E.A.
   IAI39 UPEC CU928164.2 Genoscope C.E.A.
   UMN026 UPEC CU928163.2 Genoscope C.E.A.
   SMS-3-5 non-pathogenic CP000970.1 [35]
   O157:H7 EC4115 EHEC CP001164.1 J. Craig Venter Institute
   O157:H7 EC4115 EHEC CP001164.1 J. Craig Venter Institute
   55989 EAEC CU928145.2 Genoscope C.E.A.
   E24377A ETEC CP000800.1 The Institute for Genomic Research
   S88 MNEC CU928161.2 Genoscope C.E.A.
Shigella boydii CDC 3083-94 18 CP001063.1 J. Craig Venter Institute
Salmonella enterica Enteritidis P125109 PT4 AM933172.1 [97]
Klebsiella pneumoniae 342   CP000964.1 [31]