Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

Ramayo-Caldas, Yuliaxis; Castelló, Anna; Pena, Romi N; Alves, Estefania; Mercadé, Anna; Souza, Carla A; Fernández, Ana I; Perez-Enciso, Miguel; Folch, Josep M

doi:10.1186/1471-2164-11-593

BMC Genomics

Table 1 Description of the 49 CNVRs detected in the pig genome

From: Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip

CNVR ID	Chr.	Start	End	Length (Kb)	Status	Number of Animals
1	1	24217581	24340263	122.68	Loss-Gain	13
2	1	45428275	45549702	121.43	Gain	7
3	1	48467320	48606417	139.10	Loss-Gain	24
4	1	65873816	72839149	6965.33	Loss-Gain	50
5	1	84499444	86580142	2080.70	Loss-Gain	101
6	1	102184641	102246547	61.91	Loss-Gain	73
7	1	160653704	161917767	1264.06	Gain	49
8	1	179815713	179914790	99.08	Loss-Gain	197
9	1	181518754	181741363	222.61	Loss-Gain	86
10	1	206491920	206869145	377.23	Loss	12
11	1	222291368	233007189	10715.82	Loss	11
12	1	237242221	237929823	687.60	Gain	8
13	2	11601476	11714214	112.74	Gain	5
14	2	21970642	22174716	204.07	Gain	7
15	2	40533655	41466383	932.73	Loss	270
16	3	56202930	56347970	145.04	Gain	9
17	4	24971805	25077329	105.52	Loss-Gain	39
18	4	33537533	33962195	424.66	Loss-Gain	8
19	4	50569393	51322987	753.59	Gain	14
20	4	119210502	119256548	46.05	Gain	7
21	4	134367793	134519459	151.67	Loss-Gain	21
22	5	23899971	24070933	170.96	Loss-Gain	51
23	5	35733150	37322403	1589.25	Loss-Gain	51
24	5	35933178	36136940	203.76	Gain	12
25	7	77371678	77536074	164.40	Gain	18
26	7	82665585	83053927	388.34	Loss-Gain	18
27	7	97896821	98115996	219.18	Gain	21
28	7	110105319	110156658	51.34	Loss-Gain	11
29	10	4479233	4701713	222.48	Gain	42
30	11	65309203	65381195	71.99	Loss	20
31	11	56381032	57812846	1431.81	Loss-Gain	45
32	13	64352825	64798051	445.23	Loss-Gain	105
33	13	118821556	118923746	102.19	Gain	26
34	14	53301700	55310453	2008.75	Loss-Gain	10
35	14	63834660	63882223	47.56	Loss-Gain	176
36	14	111363926	111540634	176.71	Loss	150
37	14	97526178	99696847	2170.67	Loss-Gain	49
38	15	99843606	100116097	272.49	Loss-Gain	75
39	17	6525429	6635237	109.81	Loss	84
40	8	80936785	81030481	93.70	Loss-Gain	93
41	13	81503361	81601546	98.19	Loss-Gain	118
42	1	130025060	130085466	60.41	Gain	26
43	1	276666775	276786004	119.23	Gain	13
44	5	79779580	79931050	151.47	Gain	34
45	8	35691571	36104826	413.26	Gain	53
46	8	104917016	104968103	51.09	Gain	5
47	11	30072771	30117419	44.65	Loss	38
48	13	94769297	94922644	153.35	Loss	66
49	13	128150975	128360061	209.09	Gain	17

The genomic coordinates are expressed in bp and are relative to the Sus scrofa April 2009 genome sequence assembly (Sscrofa9)

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ISSN: 1471-2164

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