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Table 3 miRNA target genes identified in barley and confirmed by previous studies

From: A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.)

miRNA family miRNA name Unigene Unigene annotation Literature reported target for this miRNA (citation number in brackets)
156 miR156 Hv.29207 protein coding (SBP domain) Arabidopsis thaliana[24]
  miR156 Hv.5875 protein coding (SBP domain) Oryza sativa[8]
  miR156 Hv.28351 protein coding (SBP domain) Hordeum vulgare[2]
  miR156 Hv.21387 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2) Triticum aestivum[2]
  miR156 Hv.28414 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)  
     Arabidopsis thaliana[24]
159 miR159 Hv.12 MYB family transcription factor Oryza sativa[39]
     Hordeum vulgare[2]
     Triticum aestivum[2]
     Arabidopsis thaliana[24]
160 miR160 Hv.5089 ARF16 (AUXIN RESPONSE FACTOR 16) Oryza sativa[39]
     Hordeum vulgare[2]
     Triticum aestivum[2]
164 miR164 Hv.877 NAC domain containing protein Arabidopsis thaliana[24]
  miR164 Hv.28795 NAC domain containing protein Zea mays[14]
  miR164 Hv.25370 NAM superfamily Hordeum vulgare[2]
  miR164 Hv.21779 NAC domain containing protein Triticum aestivum[2]
168 miR168 Hv.26206 AGO1 (ARGONAUTE 1) Arabidopsis thaliana[24]
  miR168 Hv.19452 AGO1 (ARGONAUTE 1) Hordeum vulgare[2]
     Triticum aestivum[2]
169 miR169 Hv.13681 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Aquilegia coerulea[40]
  miR169 Hv.406 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Hordeum vulgare[2]
  miR169 Hv.9532 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Triticum aestivum[2]
     Arabidopsis thaliana[24]
171 miR171 Hv.9855 GRAS family transcription factor Brachypodium distachyon[41]
     Hordeum vulgare[2]
     Triticum aestivum[2]
     Arabidopsis[42]
172 miR172 Hv.6575 RAP2.7/TOE1 (TARGET OF EAT1 1), AP2 superfamily Hordeum vulgare[2]
     Triticum aestivum[2]
393 miR393 Hv.29376 AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding/ubiquitin-protein ligase Aquilegia coerulea[40]
  miR393 Hv.2498 TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase Hordeum vulgare[2]
     Triticum aestivum[2]
     Aquilegia coerulea[40]
394 miR394 Hv.8877 F-box family protein Hordeum vulgare[2]
     Triticum aestivum[2]
     Aquilegia coerulea[40]
395 miR395 Hv.12870 ATPS1 Hordeum vulgare[2]
     Triticum aestivum[2]
396 miR396 Hv.28722 WRC, QLQ  
  miR396 Hv.22031 growth-regulating factor Arabidopsis thaliana[39]
  miR396 Hv.19321 WRC, QLQ Oryza sativa[39]
  miR396 Hv.9742 WRC, QLQ Triticum aestivum[2]
399 miR399 Hv.5443 ATUBC24/PHO2/UBC24 (PHOSPHATE 2), ubiquitin-protein ligase Arabidopsis thaliana[39]
     Oryza sativa[39]
408 miR408 Hv.10831 ARPN (PLANTACYANIN), copper ion binding (Cu-bind-like superfamily) Medicago truncatula[43]
     Populus trichocarpa[44]
  miR408 Hv.24052 Plastocyanin-like domain-containing protein (Cu-bind-like superfamily) Oryza sativa[45]
     Hordeum vulgare[2]
     Triticum aestivum[2]
  miR408 Hv.20945 ARGONAUTE like superfamily Hordeum vulgare[2]
529 miR529 Hv.29207 protein coding (SBP domain) Aquilegia coerulea[40]
  miR529 Hv.28351 protein coding (SBP domain) Zea Mays[46]
     Arabidopsis thaliana[47]
827 miR827 HV. 10218 SPX superfamily, MFS superfamily Oryza sativa[48]