Table 4 Novel miRNA target genes identified
From: A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.)
miRNA family | miRNA name | Unigene | Unigene annotation | Functional annotation |
|---|---|---|---|---|
390 | miR390 | Hv.15993 | protease inhibitor, seed storage, lipid transfer protein (LTP) family protein | lipid transport |
441 | miR1126 | Hv.10635 | beta-adaptin | protein transport |
| Â | miR1126 | Hv.25101 | ankyrin protein kinase, serine/threonine protein kinase | regulation in signal transduction |
| Â | miR1126 | Hv.18172 | protein coding | unknown function |
| Â | miR1126 | Hv.5267 | SRT2, DNA binding | vernalization, auxin signalling |
818 | miR818+1436 | Hv.11323 | protein coding | unknown function |
| Â | miR818+1436 | Hv.9623 | NLI interacting factor (NIF) family protein | phosphatase activity |
| Â | miR1436 | Hv.8609 | Coproporphyrinogen III oxidase | chlorophyll biosynthesis |
| Â | miR1436 | Hv.16854 | P-loop NTPase superfamily | unknown function |
| Â | miR1436 | Hv.8351 | protein coding | unknown function |
| Â | miR1436 | Hv.28025 | protein coding | unknown function |
| Â | miR1436 | Hv.27779 | Vps51 superfamily | vescicular transport |
| Â | miR1436 | Hv.19811 | ILL3 (IAA-amino acid hydrolase ILR1-like 3), metallopeptidase | stress and hormone response |
| Â | miR1436 | Hv.18734 | MAP kinase | signal transduction, stress signalling |
| Â | miR1436 | Hv.15543 | protein coding | unknown function |
| Â | miR1436 | Hv.12920 | PKc-like superfamily | abiotic stress resistance |
| Â | miR1436 | Hv.11057 | Integral membrane family protein | endomembrane system |
| Â | miR1436 | Hv.3476 | protein coding | unknown function |
| Â | miR1439 | Hv.19109 | PKc-like superfamily | unknown function |
| Â | miR1439 | Hv.23816 | exo-endo-phos superfamily | unknown function |
| Â | miR1439 | Hv.11224 | tatD-related deoxyribonuclease family protein | deoxyribonuclease activity |
821 | miR821 | Hv.3660 | GDH1 (Glutamate dehydrogenase) | nitrogen metabolism |
1030 | miR1030 | Hv.12064 | AS1/ATMYB91/ATPHAN/MYB91 (ASYMMETRIC LEAVES 1, MYB DOMAIN PROTEIN) | transcription factor |
| Â | miR1030 | Hv.7960 | protein coding | unknown function |
| Â | miR1030 | Hv.14867 | RNA recognition motif (RRM)-containing protein | post-transcriptional gene expression processes |
1119 | miR1119 | Hv.29225 | protein coding | unknown function |
| Â | miR1119 | Hv.29210 | protein coding | unknown function |
| Â | miR1119 | Hv.27666 | protein coding | unknown function |
| Â | miR1119 | Hv.23883 | ADF2 (ACTIN DEPOLYMERIZING FACTOR 2), actin binding | actin turnover, stress response, plant defense signalling pathway |
| Â | miR1119 | Hv.23689 | RRM superfamily, RNA binding | involved in post-transcriptional gene expression processes |
| Â | miR1119 | Hv.23343 | molybdenum cofactor sulfurase family protein, superfamily | stress response |
1120 | miR1120 | Hv.21827 | protein coding | unknown function |
| Â | miR1121 | Hv.464 | serine/threonine kinase | response to salt stress |
| Â | miR1121 | Hv.20180 | Kelch repeat-containing protein | unknown function |
| Â | miR1121 | Hv.2132 | protein coding | unknown function |
| Â | miR1121 | Hv.26959 | POK (POKY POLLEN TUBE) | pollen tube growth |
| Â | miR1121 | Hv.20763 | SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase | flavonoid biosyntetic processes and senescence |
| Â | miR1121 | Hv.20600 | serine/threonine protein kinase, PKc-like superfamily | abiotic stress resistance |
| Â | miR1121 | Hv.12124 | ATPase family AAA domain-containing protein | unknown function |
| Â | miR1121 | Hv.10391 | protein coding | unknown function |
| Â | miR1121 | Hv.9294 | protein coding | unknown function |
| Â | miR1121 | Hv.6581 | protein coding | unknown function |
| Â | miR1121 | Hv.6532 | ATPase-Plipid, haloacid dehalogenase-like hydrolase family protein | ATPase activity |
| Â | miR1121 | Hv.4756 | FAR1 superfamily, MULE transposon domain | light control of development |
| Â | miR1121 | Hv.3142 | CRS1-YhbY (CRM domain) superfamily | RNA binding/intron splicing |
1122 | miR1122 | Hv.12219 | serine/threonine protein kinase, PKc-like superfamily | abiotic stress resistance |
| Â | miR1128+1133 | Hv.23560 | indole-3-glycerol phosphate synthase, TIM-phosphate binding superfamily | aminoacid biosynthesis |
| Â | miR1128+1133 | Hv.679 | UBIQUITIN CARRIER PROTEIN, ubiquitin-protein ligase | ubiquitination |
| Â | miR1128+ 1133+1136 | Hv.26146 | AIM1 (ABNORMAL INFLORESCENCE MERISTEM), enoyl-CoA hydratase | auxin metabolism |
| Â | miR1128+1135 | Hv.23257 | integral membrane HPP family protein | unknown function |
| Â | miR1128+1135 | Hv.21122 | SOS5 (SALT OVERLY SENSITIVE 5) | salt signalling/osmo-stress |
| Â | miR1128 | Hv.17314 | protein coding | unknown function |
| Â | miR1128 | Hv.14876 | ARF-GAP DOMAIN, C2 superfamily | vescicle traffic/development |
| Â | miR1128+1133 | Hv.12752 | ATP-dependent peptidase, ATPase, metallopeptidase | peptidase activity |
| Â | miR1128+ 1133+1136 | Hv.6454 | oligopeptide transporter | oligopeptide transporter |
| Â | miR1128+1133 | Hv.3596 | Cysteine hydrolases, catalytic/nicotinamidase | response to abscisic acid stimulus |
| Â | miR1133 | Hv.14592 | pathogenesis related protein-1 | plant defense |
| Â | miR1133 | Hv.12091 | oxidoreductase, zinc-binding dehydrogenase family protein | stress response |
| Â | miR1133 | Hv.28954 | HLH superfamily | transcription factor |
| Â | miR1133 | Hv.28555 | serine/threonine protein kinase, PKc-like superfamily | abiotic stress resistance |
| Â | miR1133 | Hv.4244 | CTP synthase | CTP synthase activity |
| Â | miR1135 | Hv.5272 | Epidermal growth factor receptor-like protein | vacuolar transport |
| Â | miR1135 | Hv.223 | Limit dextrinase | carbohydrate metabolic process |
| Â | miR1135 | Hv.18515 | ubiquitin family protein | ubiquitination |
| Â | miR1135 | Hv.16976 | HEAT repeat-containing protein | unknown function |
| Â | miR1135 | Hv.16897 | ATTPS6 (A. thaliana trehalose phosphatase/synthase 6), transferase, transferring glycosyl groups, trehalose-phosphatase | development |
1130 | miR1130 | Hv.12920 | PKc-like superfamily | abiotic stress response |
1134 | miR1134 | Hv.29810 | WRKY transcription factor | transcription factor |
| Â | miR1134 | Hv.29222 | ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | carbon fixation |
| Â | miR1134 | Hv.22973 | octopine synthase binding factor1, ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53), DNA binding/protein heterodimerization/sequence-specific DNA binding/transcription factor | stress response |
| Â | miR1134 | Hv.22600 | fumarylacetoacetate hydrolase family protein | tyrosine catabolism |
| Â | miR1134 | Hv.9579 | L-asparaginase, putative/L-asparagine amidohydrolase, putative | nitrogen metabolism |
| Â | miR1134 | Hv.239 | AWPM-19-like membrane family protein | freezing tolerance |
| Â | miR1134 | Hv.26138 | AWPM-19-like membrane family protein | freezing tolerance |
| Â | miR1134 | Hv.24001 | dehydrin family protein | stress response |
| Â | miR1134 | Hv.23108 | B3-hordein fragment | seed storage protein |
| Â | miR1134 | Hv.23080 | ATNUDT17 (A. thaliana Nudix hydrolase homolog 17) | hydrolase activity |
| Â | miR1134 | Hv.16060 | Sulfotransferase domain | sulfotransferase activity |
1438 | miR1438 | Hv.26216 | RAP2.2, AP2 superfamily | transcription factor |
1533 | miR1533 | Hv.29041 | aldehyde dehydrogenase | stress response |
1846 | miR1846 | Hv.19467 | UDP-GLUCOSYL TRANSFERASE | stress response |
1848 | miR1848 | Hv.6944 | Pollen_Ole_e_I super family | unknown function |
1862 | miR1862 | Hv.26602 | protein coding | unknown function |
1867 | miR1867 | Hv.18578 | FLAVODOXIN-LIKE QUINONE REDUCTASE 1 | auxin response gene |
| Â | miR1867 | Hv.1368 | ATPase, coupled to transmembrane movement of substances | ATPase activity |
1871 | miR1871 | Hv.28885 | protein coding | unknown function |
2091 | miR2091 | Hv.6058 | FKBP superfamily | regulation of photosyntetic process/stress response/plant hormone pathways |
2094 | miR2094 | Hv.699 | RNA binding | RNA binding |
2102 | miR2102 | Hv.22799 | RNA binding | stress response |