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Table 4 The di- to hexanucleotide microsatellites found in the genome of Meloidogyne incognita

From: Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita

Motif length

Motif

Iteration

Total no. (%)

Longest locus

  

≤10a

11-20

21-30

>30

  

2

AC

37

7

1

1

46 (2.05)

(AC)51

 

AG

82

14

1

-

97 (4.32)

2× (AG)21

 

AT

44

7

1

1

53 (2.36)

(AT)47

3

AAC

934

1

-

-

935 (41.65)

(AAC)11

 

AAG

211

-

-

-

211 (9.40)

2× (AAG)10

 

AAT

346

3

-

-

349 (15.55)

(AAT)14

 

ACC

83

-

-

-

83 (3.70)

3x (ACC)9

 

ACT

67

-

-

-

67 (2.98)

2× (ACT)10

 

AGG

134

1

-

-

135 (6.01)

(AGG)11

 

ACG

14

-

-

-

14 (0.62)

14x (ACG)5

 

CGG

2

-

-

-

2 (0.09)

2× (CGG)5

4

AAAC

6

-

-

-

6 (0.27)

(AAAC)7

 

AAAT

110

3

1

1

115 (5.12)

(AAAT)41

 

AAAG

1

-

-

-

1 (0.04)

(AAAG)6

 

AATT

53

-

-

-

53 (2.36)

(AATT)10

 

AAGG

3

-

-

-

3 (0.13)

(AAGG)10

 

AGGG

13

-

-

-

13 (0.58)

2× (AGGG)10

 

AGGT

4

1

-

9

14 (0.62)

(AGGT)124

 

AGTT

1

-

-

-

1 (0.04)

(AGTT)5

 

ACGT

1

-

-

-

1 (0.04)

(ACGT)5

 

AACT

1

-

-

-

1 (0.04)

(AACT)7

 

AACG

3

-

-

-

3 (0.13)

3x (AACG)5

 

GGGT

1

-

-

-

1 (0.04)

(GGGT)5

 

ACTT

1

-

-

-

1 (0.04)

(ACTT)5

5

AAATT

3

-

-

-

3 (0.13)

(AAATT)7

 

AAACG

24

-

-

-

24 (1.07)

(AAACG)6

 

AAAAG

1

-

-

-

1 (0.04)

(AAAAG)5

 

CCTTT

1

-

-

-

1 (0.04)

(CCTTT)5

 

AAGGG

2

-

-

-

2 (0.09)

(AAGGG)5

 

AGGGG

1

-

-

-

1 (0.04)

(AGGGG)5

 

AGTTT

1

-

-

-

1 (0.04)

(AGTTT)5

 

CGGTT

1

-

-

-

1 (0.04)

(CGGTT)5

6

AAAAAT

2

-

-

-

2 (0.09)

2× (AAAAAT)5

 

AAATTT

1

-

-

-

1 (0.04)

(AAATTT)5

 

ACGGGG

1

-

-

-

1 (0.04)

(ACGGGG)7

 

AACGGT

2

-

-

-

2 (0.09)

2× (AACGGT)5

 

Total

2192

37

4

12

2245

 
  1. aFor dinucleotides, n ≥ 8; for tri- to hexanucleotides, n ≥ 5.