Skip to main content

Table 2 KS14 genome annotation

From: Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex

Gene

Start

End

Putative function

Strand

Predicted RBS and start codon

Length (no. of aa residues)

Closest relative

Alignment region (no. of aa residues)

% ID

Source

GenBank accession no.

1

1

261

unknown

-

GAGGCGAggcATG

86

hypothetical protein BB1680

18-96/101

35

Bordetella bronchiseptica RB50

NP_888225.1

2

270

3041

zinc finger CHC2-family protein

-

GCGATTCTGAaaaATG

923

hypothetical protein RPRSA1_gp47

1-933/934

65

Ralstonia phage phiRSA1

YP_001165296.1

3

3122

3511

unknown

-

GAGGGAccgaaccATG

129

hypothetical protein Csal_1360

9-103/130

33

Chromohalobacter salexigens DSM 3043

YP_573414.1

4

3857

4036

unknown

-

GAAAAcaccATG

59

hypothetical protein PC1_2629

21-62/63

45

Pectobacterium carotovorum subsp. carotovorum PC1

YP_003018195.1

5

4142

4849

repressor

+

AAGGcccaatATG

235

hypothetical protein GCWU000324_01220

13-220/226

33

Kingella oralis ATCC 51147

ZP_04601747.1

6

4809

5486

serine recombinase

-

GAAGGCGAtacaagaaaATG

225

resolvase domain-containing protein

4-194/195

57

Shewanella sp. W3-18-1

YP_965429.1

7

5479

5790

unknown

-

GAGGCGGGcgagctATG

103

hypothetical protein BuboB_03089

9-106/114

45

Burkholderia ubonensis Bu

ZP_02376681.1

8

5787

6368

unknown

-

GACTACAGGcgaccATG

193

hypothetical protein pRALTA_0144

25-180/255

48

Cupriavidus taiwanensis

YP_001796036.1

9

6506

7054

unknown

+

AGGAAAGAAAAcggtcgtTTG

182

hypothetical protein Ajs_3318

20-138/138

31

Acidovorax sp. JS42

YP_987516.1

10

7093

8130

tail protein (D)

-

AAAAAagaATG

345

fels-2 prophage protein

25-366/366

65

Burkholderia oklahomensis EO147

ZP_02353972.1

11

8127

8558

tail protein (U)

-

GGAGGAAAGAAAcgATG

143

bacteriophage tail-related protein

1-133/141

64

Burkholderia oklahomensis EO147

ZP_02353973.1

12

8574

11102

tail tape measure protein (T)

-

GTATGGAAGcgaATG

842

phage tail tape measure protein, TP901 family

5-918/924

39

Pantoea sp. At-9 b

ZP_05730476.1

13

11251

11535

tail protein (E)

-

AGAGAAAgaaATG

94

hypothetical protein BPSL0148

12-103/114

72

Burkholderia pseudomallei K96243

YP_106776.1

14

11099

11535

tail protein (E+E')

-

AGAGAAAgaaATG

145

gpE+E'

3-142/142

49

Enterobacteria phage P2

NP_046780.1

15

11623

12138

tail tube protein (FII)

-

AGGGAGtaaATG

171

phage major tail tube protein

1-169/169

66

Burkholderia sp. CCGE1001

ZP_06292830.1

16

12150

13325

tail sheath protein (FI)

-

AAACAGGAAttcagATG

391

putative phage major tail sheath protein

1-390/390

72

Burkholderia cenocepacia J2315

YP_002229261.1

17

13387

14007

tail fiber assembly protein (G)

-

GAAGGGAAccgaccATG

206

gp31, bacteriophage-acquired protein

1-189, 196-266/278

66, 54

Burkholderia multivorans CGD1

ZP_03587603.1

18

14026

15534

tail fiber protein

-

ACGGATAtctgacctATG

502

hypothetical protein BuboB_27067

3-534/534

55

Burkholderia ubonensis Bu

ZP_02381413.1

19

15538

16080

baseplate assembly protein (I)

-

GGGGGCAtttacgaaaATG

180

phage-related tail protein

1-179/180

73

Burkholderia ubonensis Bu

ZP_02381412.1

20

16073

16987

baseplate assembly protein (J)

-

AACGGGGGTGcggcATG

304

phage baseplate assembly protein

1-303/304

74

Burkholderia ubonensis Bu

ZP_02381411.1

21

16984

17346

baseplate assembly protein (W)

-

GTGAGCGCAccgcaATG

120

phage baseplate assembly protein

1-117/117

66

Burkholderia thailandensis MSMB43

ZP_02466378.1

22

17343

18002

baseplate assembly protein (V)

-

AACATGGAggcATG

219

bacteriophage baseplate assembly protein V

1-227/227

57

Burkholderia ubonensis Bu

ZP_02381409.1

23

18087

18545

tail completion protein (S)

-

GATCCGGCGGcgcaATG

152

phage virion morphogenesis protein

1-153/155

66

Burkholderia sp. CCGE1001

ZP_06292822.1

24

18533

18985

tail completion protein (R)

-

ACCGcccccgaccATG

150

P2 phage tail completion R family protein

1-136/140

54

Burkholderia sp. CCGE1001

ZP_06292821.1

25

18978

19256

Rz1 (LysC)

-

GAGGCGttgaaacATG

92

hypothetical phage protein

1-83/91

59

Burkholderia pseudomallei 1655

ZP_04890536.1

26

19102

19554

Rz (LysB)

-

GAGAAGGcggccgcATG

150

putative phage-encoded lipoprotein

19-142/142

44

Burkholderia glumae BGR1

YP_002910045.1

27

19551

20357

endolysin

-

GCGGAGtgaATG

268

putative phage-encoded peptidoglycan binding protein

5-268/268

66

Burkholderia ubonensis Bu

ZP_02376668.1

28

20354

20620

holin

-

GAAAGGGctgacccATG

88

protein of unknown function DUF754

1-88/88

61

Burkholderia sp. CCGE1001

ZP_06292819.1

29

20624

20965

putative antiholin

-

GGAGtcgccaacATG

113

hypothetical protein BuboB_26997

1-113/114

74

Burkholderia ubonensis Bu

ZP_02381399.1

30

20980

21186

tail protein (X)

-

GATCGAGctgatctgATG

68

putative phage tail protein

1-67/67

61

Erwinia tasmaniensis Et1/99

YP_001906519.1

31

21186

21677

capsid completion protein (L)

-

AGAGctgaaaccATG

163

fels-2 prophage protein

31-172/172

55

Burkholderia thailandensis E264

YP_439544.1

32

21779

22465

terminase, endonuclease subunit (M)

-

AACGGAGGcatgacgcgATG

228

bacteriophage terminase, endonuclease subunit

3-220/229

59

Burkholderia oklahomensis EO147

ZP_02360025.1

33

22481

23497

capsid protein (N)

-

GGAGAAcacaccacATG

338

bacteriophage protein

1-338/338

68

Ralstonia solanacearum GMI1000

NP_520058.1

34

23540

24577

capsid scaffolding protein (O)

-

GGAGAcctaacaATG

345

capsid scaffolding

4-349/349

50

Burkholderia sp. CCGE1001

ZP_06292813.1

35

24693

26507

terminase ATPase subunit (P)

+

GGGTACAcataggcgggcGTG

604

protein of unknown function DUF264

13-586/588

75

Burkholderia sp. CCGE1001

ZP_06292812.1

36

26507

27559

portal vertex protein (Q)

+

ATGGAGttctcttaATG

350

putative phage portal vertex protein

1-347/351

70

Burkholderia pseudomallei 7894

ZP_02487524.1

37

27740

28495

replication initiation

-

AGGGGAAGcgtcccaATG

251

initiator RepB protein

16-251/251

73

Ralstonia pickettii 12J

YP_001901323.1

38

28834

29010

unknown

+

GTGAGGGGcaacaaGTG

58

none

    

39

29150

29695

unknown

+

GTGATGCACGAccgcccgaATG

181

flagellar hook-associated protein FlgK

257-334/672

29

Acidovorax ebreus TPSY

YP_002554543.1

40

30436

31086

DNA partitioning

+

GGAGCATGcgaaATG

216

ParA family protein, putative

1-211/217

69

Burkholderia thailandensis E264

YP_439556.1

41

31127

31438

unknown

+

AGCGAGGtaatagcaaaATG

103

hypothetical protein BuboB_03094

1-73/88

49

Burkholderia ubonensis Bu

ZP_02376682.1

42

31435

31581

unknown

+

AAAGAGGGggcATG

48

none

    

43

31603

31821

unknown

+

GAAAAGGGGAAttgaATG

72

hypothetical protein SMR0083

10-63/63

57

Serratia marcescens

NP_941157.1

44

31909

32217

unknown

-

GGAGTGAtgtttATG

102

hypothetical protein BuboB_03104

1-69/84

73

Burkholderia ubonensis Bu

ZP_02376684.1

  1. Abbreviations: RBS, ribosome-binding site; aa, amino acid; % ID, percent identity. The P2 proteins that are similar to KS14 proteins based on CoreGenes analysis are shown in brackets in the putative function column.