From: Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
Gene | Start | End | Putative function | Strand | Predicted RBS and start codon | Length (no. of aa residues) | Closest relative | Alignment region (no. of aa residues) | % ID | Source | GenBank accession no. |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 261 | unknown | - | GAGGCGAggcATG | 86 | hypothetical protein BB1680 | 18-96/101 | 35 | Bordetella bronchiseptica RB50 | NP_888225.1 |
2 | 270 | 3041 | zinc finger CHC2-family protein | - | GCGATTCTGAaaaATG | 923 | hypothetical protein RPRSA1_gp47 | 1-933/934 | 65 | Ralstonia phage phiRSA1 | YP_001165296.1 |
3 | 3122 | 3511 | unknown | - | GAGGGAccgaaccATG | 129 | hypothetical protein Csal_1360 | 9-103/130 | 33 | Chromohalobacter salexigens DSM 3043 | YP_573414.1 |
4 | 3857 | 4036 | unknown | - | GAAAAcaccATG | 59 | hypothetical protein PC1_2629 | 21-62/63 | 45 | Pectobacterium carotovorum subsp. carotovorum PC1 | YP_003018195.1 |
5 | 4142 | 4849 | repressor | + | AAGGcccaatATG | 235 | hypothetical protein GCWU000324_01220 | 13-220/226 | 33 | Kingella oralis ATCC 51147 | ZP_04601747.1 |
6 | 4809 | 5486 | serine recombinase | - | GAAGGCGAtacaagaaaATG | 225 | resolvase domain-containing protein | 4-194/195 | 57 | Shewanella sp. W3-18-1 | YP_965429.1 |
7 | 5479 | 5790 | unknown | - | GAGGCGGGcgagctATG | 103 | hypothetical protein BuboB_03089 | 9-106/114 | 45 | Burkholderia ubonensis Bu | ZP_02376681.1 |
8 | 5787 | 6368 | unknown | - | GACTACAGGcgaccATG | 193 | hypothetical protein pRALTA_0144 | 25-180/255 | 48 | Cupriavidus taiwanensis | YP_001796036.1 |
9 | 6506 | 7054 | unknown | + | AGGAAAGAAAAcggtcgtTTG | 182 | hypothetical protein Ajs_3318 | 20-138/138 | 31 | Acidovorax sp. JS42 | YP_987516.1 |
10 | 7093 | 8130 | tail protein (D) | - | AAAAAagaATG | 345 | fels-2 prophage protein | 25-366/366 | 65 | Burkholderia oklahomensis EO147 | ZP_02353972.1 |
11 | 8127 | 8558 | tail protein (U) | - | GGAGGAAAGAAAcgATG | 143 | bacteriophage tail-related protein | 1-133/141 | 64 | Burkholderia oklahomensis EO147 | ZP_02353973.1 |
12 | 8574 | 11102 | tail tape measure protein (T) | - | GTATGGAAGcgaATG | 842 | phage tail tape measure protein, TP901 family | 5-918/924 | 39 | Pantoea sp. At-9 b | ZP_05730476.1 |
13 | 11251 | 11535 | tail protein (E) | - | AGAGAAAgaaATG | 94 | hypothetical protein BPSL0148 | 12-103/114 | 72 | Burkholderia pseudomallei K96243 | YP_106776.1 |
14 | 11099 | 11535 | tail protein (E+E') | - | AGAGAAAgaaATG | 145 | gpE+E' | 3-142/142 | 49 | Enterobacteria phage P2 | NP_046780.1 |
15 | 11623 | 12138 | tail tube protein (FII) | - | AGGGAGtaaATG | 171 | phage major tail tube protein | 1-169/169 | 66 | Burkholderia sp. CCGE1001 | ZP_06292830.1 |
16 | 12150 | 13325 | tail sheath protein (FI) | - | AAACAGGAAttcagATG | 391 | putative phage major tail sheath protein | 1-390/390 | 72 | Burkholderia cenocepacia J2315 | YP_002229261.1 |
17 | 13387 | 14007 | tail fiber assembly protein (G) | - | GAAGGGAAccgaccATG | 206 | gp31, bacteriophage-acquired protein | 1-189, 196-266/278 | 66, 54 | Burkholderia multivorans CGD1 | ZP_03587603.1 |
18 | 14026 | 15534 | tail fiber protein | - | ACGGATAtctgacctATG | 502 | hypothetical protein BuboB_27067 | 3-534/534 | 55 | Burkholderia ubonensis Bu | ZP_02381413.1 |
19 | 15538 | 16080 | baseplate assembly protein (I) | - | GGGGGCAtttacgaaaATG | 180 | phage-related tail protein | 1-179/180 | 73 | Burkholderia ubonensis Bu | ZP_02381412.1 |
20 | 16073 | 16987 | baseplate assembly protein (J) | - | AACGGGGGTGcggcATG | 304 | phage baseplate assembly protein | 1-303/304 | 74 | Burkholderia ubonensis Bu | ZP_02381411.1 |
21 | 16984 | 17346 | baseplate assembly protein (W) | - | GTGAGCGCAccgcaATG | 120 | phage baseplate assembly protein | 1-117/117 | 66 | Burkholderia thailandensis MSMB43 | ZP_02466378.1 |
22 | 17343 | 18002 | baseplate assembly protein (V) | - | AACATGGAggcATG | 219 | bacteriophage baseplate assembly protein V | 1-227/227 | 57 | Burkholderia ubonensis Bu | ZP_02381409.1 |
23 | 18087 | 18545 | tail completion protein (S) | - | GATCCGGCGGcgcaATG | 152 | phage virion morphogenesis protein | 1-153/155 | 66 | Burkholderia sp. CCGE1001 | ZP_06292822.1 |
24 | 18533 | 18985 | tail completion protein (R) | - | ACCGcccccgaccATG | 150 | P2 phage tail completion R family protein | 1-136/140 | 54 | Burkholderia sp. CCGE1001 | ZP_06292821.1 |
25 | 18978 | 19256 | Rz1 (LysC) | - | GAGGCGttgaaacATG | 92 | hypothetical phage protein | 1-83/91 | 59 | Burkholderia pseudomallei 1655 | ZP_04890536.1 |
26 | 19102 | 19554 | Rz (LysB) | - | GAGAAGGcggccgcATG | 150 | putative phage-encoded lipoprotein | 19-142/142 | 44 | Burkholderia glumae BGR1 | YP_002910045.1 |
27 | 19551 | 20357 | endolysin | - | GCGGAGtgaATG | 268 | putative phage-encoded peptidoglycan binding protein | 5-268/268 | 66 | Burkholderia ubonensis Bu | ZP_02376668.1 |
28 | 20354 | 20620 | holin | - | GAAAGGGctgacccATG | 88 | protein of unknown function DUF754 | 1-88/88 | 61 | Burkholderia sp. CCGE1001 | ZP_06292819.1 |
29 | 20624 | 20965 | putative antiholin | - | GGAGtcgccaacATG | 113 | hypothetical protein BuboB_26997 | 1-113/114 | 74 | Burkholderia ubonensis Bu | ZP_02381399.1 |
30 | 20980 | 21186 | tail protein (X) | - | GATCGAGctgatctgATG | 68 | putative phage tail protein | 1-67/67 | 61 | Erwinia tasmaniensis Et1/99 | YP_001906519.1 |
31 | 21186 | 21677 | capsid completion protein (L) | - | AGAGctgaaaccATG | 163 | fels-2 prophage protein | 31-172/172 | 55 | Burkholderia thailandensis E264 | YP_439544.1 |
32 | 21779 | 22465 | terminase, endonuclease subunit (M) | - | AACGGAGGcatgacgcgATG | 228 | bacteriophage terminase, endonuclease subunit | 3-220/229 | 59 | Burkholderia oklahomensis EO147 | ZP_02360025.1 |
33 | 22481 | 23497 | capsid protein (N) | - | GGAGAAcacaccacATG | 338 | bacteriophage protein | 1-338/338 | 68 | Ralstonia solanacearum GMI1000 | NP_520058.1 |
34 | 23540 | 24577 | capsid scaffolding protein (O) | - | GGAGAcctaacaATG | 345 | capsid scaffolding | 4-349/349 | 50 | Burkholderia sp. CCGE1001 | ZP_06292813.1 |
35 | 24693 | 26507 | terminase ATPase subunit (P) | + | GGGTACAcataggcgggcGTG | 604 | protein of unknown function DUF264 | 13-586/588 | 75 | Burkholderia sp. CCGE1001 | ZP_06292812.1 |
36 | 26507 | 27559 | portal vertex protein (Q) | + | ATGGAGttctcttaATG | 350 | putative phage portal vertex protein | 1-347/351 | 70 | Burkholderia pseudomallei 7894 | ZP_02487524.1 |
37 | 27740 | 28495 | replication initiation | - | AGGGGAAGcgtcccaATG | 251 | initiator RepB protein | 16-251/251 | 73 | Ralstonia pickettii 12J | YP_001901323.1 |
38 | 28834 | 29010 | unknown | + | GTGAGGGGcaacaaGTG | 58 | none | Â | Â | Â | Â |
39 | 29150 | 29695 | unknown | + | GTGATGCACGAccgcccgaATG | 181 | flagellar hook-associated protein FlgK | 257-334/672 | 29 | Acidovorax ebreus TPSY | YP_002554543.1 |
40 | 30436 | 31086 | DNA partitioning | + | GGAGCATGcgaaATG | 216 | ParA family protein, putative | 1-211/217 | 69 | Burkholderia thailandensis E264 | YP_439556.1 |
41 | 31127 | 31438 | unknown | + | AGCGAGGtaatagcaaaATG | 103 | hypothetical protein BuboB_03094 | 1-73/88 | 49 | Burkholderia ubonensis Bu | ZP_02376682.1 |
42 | 31435 | 31581 | unknown | + | AAAGAGGGggcATG | 48 | none | Â | Â | Â | Â |
43 | 31603 | 31821 | unknown | + | GAAAAGGGGAAttgaATG | 72 | hypothetical protein SMR0083 | 10-63/63 | 57 | Serratia marcescens | NP_941157.1 |
44 | 31909 | 32217 | unknown | - | GGAGTGAtgtttATG | 102 | hypothetical protein BuboB_03104 | 1-69/84 | 73 | Burkholderia ubonensis Bu | ZP_02376684.1 |