Skip to main content

Table 2 KS14 genome annotation

From: Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex

Gene Start End Putative function Strand Predicted RBS and start codon Length (no. of aa residues) Closest relative Alignment region (no. of aa residues) % ID Source GenBank accession no.
1 1 261 unknown - GAGGCGAggcATG 86 hypothetical protein BB1680 18-96/101 35 Bordetella bronchiseptica RB50 NP_888225.1
2 270 3041 zinc finger CHC2-family protein - GCGATTCTGAaaaATG 923 hypothetical protein RPRSA1_gp47 1-933/934 65 Ralstonia phage phiRSA1 YP_001165296.1
3 3122 3511 unknown - GAGGGAccgaaccATG 129 hypothetical protein Csal_1360 9-103/130 33 Chromohalobacter salexigens DSM 3043 YP_573414.1
4 3857 4036 unknown - GAAAAcaccATG 59 hypothetical protein PC1_2629 21-62/63 45 Pectobacterium carotovorum subsp. carotovorum PC1 YP_003018195.1
5 4142 4849 repressor + AAGGcccaatATG 235 hypothetical protein GCWU000324_01220 13-220/226 33 Kingella oralis ATCC 51147 ZP_04601747.1
6 4809 5486 serine recombinase - GAAGGCGAtacaagaaaATG 225 resolvase domain-containing protein 4-194/195 57 Shewanella sp. W3-18-1 YP_965429.1
7 5479 5790 unknown - GAGGCGGGcgagctATG 103 hypothetical protein BuboB_03089 9-106/114 45 Burkholderia ubonensis Bu ZP_02376681.1
8 5787 6368 unknown - GACTACAGGcgaccATG 193 hypothetical protein pRALTA_0144 25-180/255 48 Cupriavidus taiwanensis YP_001796036.1
9 6506 7054 unknown + AGGAAAGAAAAcggtcgtTTG 182 hypothetical protein Ajs_3318 20-138/138 31 Acidovorax sp. JS42 YP_987516.1
10 7093 8130 tail protein (D) - AAAAAagaATG 345 fels-2 prophage protein 25-366/366 65 Burkholderia oklahomensis EO147 ZP_02353972.1
11 8127 8558 tail protein (U) - GGAGGAAAGAAAcgATG 143 bacteriophage tail-related protein 1-133/141 64 Burkholderia oklahomensis EO147 ZP_02353973.1
12 8574 11102 tail tape measure protein (T) - GTATGGAAGcgaATG 842 phage tail tape measure protein, TP901 family 5-918/924 39 Pantoea sp. At-9 b ZP_05730476.1
13 11251 11535 tail protein (E) - AGAGAAAgaaATG 94 hypothetical protein BPSL0148 12-103/114 72 Burkholderia pseudomallei K96243 YP_106776.1
14 11099 11535 tail protein (E+E') - AGAGAAAgaaATG 145 gpE+E' 3-142/142 49 Enterobacteria phage P2 NP_046780.1
15 11623 12138 tail tube protein (FII) - AGGGAGtaaATG 171 phage major tail tube protein 1-169/169 66 Burkholderia sp. CCGE1001 ZP_06292830.1
16 12150 13325 tail sheath protein (FI) - AAACAGGAAttcagATG 391 putative phage major tail sheath protein 1-390/390 72 Burkholderia cenocepacia J2315 YP_002229261.1
17 13387 14007 tail fiber assembly protein (G) - GAAGGGAAccgaccATG 206 gp31, bacteriophage-acquired protein 1-189, 196-266/278 66, 54 Burkholderia multivorans CGD1 ZP_03587603.1
18 14026 15534 tail fiber protein - ACGGATAtctgacctATG 502 hypothetical protein BuboB_27067 3-534/534 55 Burkholderia ubonensis Bu ZP_02381413.1
19 15538 16080 baseplate assembly protein (I) - GGGGGCAtttacgaaaATG 180 phage-related tail protein 1-179/180 73 Burkholderia ubonensis Bu ZP_02381412.1
20 16073 16987 baseplate assembly protein (J) - AACGGGGGTGcggcATG 304 phage baseplate assembly protein 1-303/304 74 Burkholderia ubonensis Bu ZP_02381411.1
21 16984 17346 baseplate assembly protein (W) - GTGAGCGCAccgcaATG 120 phage baseplate assembly protein 1-117/117 66 Burkholderia thailandensis MSMB43 ZP_02466378.1
22 17343 18002 baseplate assembly protein (V) - AACATGGAggcATG 219 bacteriophage baseplate assembly protein V 1-227/227 57 Burkholderia ubonensis Bu ZP_02381409.1
23 18087 18545 tail completion protein (S) - GATCCGGCGGcgcaATG 152 phage virion morphogenesis protein 1-153/155 66 Burkholderia sp. CCGE1001 ZP_06292822.1
24 18533 18985 tail completion protein (R) - ACCGcccccgaccATG 150 P2 phage tail completion R family protein 1-136/140 54 Burkholderia sp. CCGE1001 ZP_06292821.1
25 18978 19256 Rz1 (LysC) - GAGGCGttgaaacATG 92 hypothetical phage protein 1-83/91 59 Burkholderia pseudomallei 1655 ZP_04890536.1
26 19102 19554 Rz (LysB) - GAGAAGGcggccgcATG 150 putative phage-encoded lipoprotein 19-142/142 44 Burkholderia glumae BGR1 YP_002910045.1
27 19551 20357 endolysin - GCGGAGtgaATG 268 putative phage-encoded peptidoglycan binding protein 5-268/268 66 Burkholderia ubonensis Bu ZP_02376668.1
28 20354 20620 holin - GAAAGGGctgacccATG 88 protein of unknown function DUF754 1-88/88 61 Burkholderia sp. CCGE1001 ZP_06292819.1
29 20624 20965 putative antiholin - GGAGtcgccaacATG 113 hypothetical protein BuboB_26997 1-113/114 74 Burkholderia ubonensis Bu ZP_02381399.1
30 20980 21186 tail protein (X) - GATCGAGctgatctgATG 68 putative phage tail protein 1-67/67 61 Erwinia tasmaniensis Et1/99 YP_001906519.1
31 21186 21677 capsid completion protein (L) - AGAGctgaaaccATG 163 fels-2 prophage protein 31-172/172 55 Burkholderia thailandensis E264 YP_439544.1
32 21779 22465 terminase, endonuclease subunit (M) - AACGGAGGcatgacgcgATG 228 bacteriophage terminase, endonuclease subunit 3-220/229 59 Burkholderia oklahomensis EO147 ZP_02360025.1
33 22481 23497 capsid protein (N) - GGAGAAcacaccacATG 338 bacteriophage protein 1-338/338 68 Ralstonia solanacearum GMI1000 NP_520058.1
34 23540 24577 capsid scaffolding protein (O) - GGAGAcctaacaATG 345 capsid scaffolding 4-349/349 50 Burkholderia sp. CCGE1001 ZP_06292813.1
35 24693 26507 terminase ATPase subunit (P) + GGGTACAcataggcgggcGTG 604 protein of unknown function DUF264 13-586/588 75 Burkholderia sp. CCGE1001 ZP_06292812.1
36 26507 27559 portal vertex protein (Q) + ATGGAGttctcttaATG 350 putative phage portal vertex protein 1-347/351 70 Burkholderia pseudomallei 7894 ZP_02487524.1
37 27740 28495 replication initiation - AGGGGAAGcgtcccaATG 251 initiator RepB protein 16-251/251 73 Ralstonia pickettii 12J YP_001901323.1
38 28834 29010 unknown + GTGAGGGGcaacaaGTG 58 none     
39 29150 29695 unknown + GTGATGCACGAccgcccgaATG 181 flagellar hook-associated protein FlgK 257-334/672 29 Acidovorax ebreus TPSY YP_002554543.1
40 30436 31086 DNA partitioning + GGAGCATGcgaaATG 216 ParA family protein, putative 1-211/217 69 Burkholderia thailandensis E264 YP_439556.1
41 31127 31438 unknown + AGCGAGGtaatagcaaaATG 103 hypothetical protein BuboB_03094 1-73/88 49 Burkholderia ubonensis Bu ZP_02376682.1
42 31435 31581 unknown + AAAGAGGGggcATG 48 none     
43 31603 31821 unknown + GAAAAGGGGAAttgaATG 72 hypothetical protein SMR0083 10-63/63 57 Serratia marcescens NP_941157.1
44 31909 32217 unknown - GGAGTGAtgtttATG 102 hypothetical protein BuboB_03104 1-69/84 73 Burkholderia ubonensis Bu ZP_02376684.1
  1. Abbreviations: RBS, ribosome-binding site; aa, amino acid; % ID, percent identity. The P2 proteins that are similar to KS14 proteins based on CoreGenes analysis are shown in brackets in the putative function column.