Table 3 KL3 genome annotation

1

122

1150

integrase

-

GGCGCAGtgtgATG

342

integrase family protein

1-342/342

98

Burkholderia ambifaria MEX-5

ZP_02905720.1

2

1150

1416

unknown

-

GAAAAtcaccATG

88

hypothetical protein BamMEX5DRAFT_1075

1-88/88

97

Burkholderia ambifaria MEX-5

ZP_02905721.1

3

2096

4891

zinc finger CHC2-family protein

-

AACAGCAAtaacgATG

931

zinc finger CHC2-family protein

1-931/931

95

Burkholderia ambifaria MEX-5

ZP_02905722.1

4

4894

5142

unknown

-

GGAGGcgcagcagcATG

82

conserved hypothetical protein

1-82/84

91

Burkholderia ambifaria MEX-5

ZP_02905723.1

5

5139

5501

unknown

-

GCGGGGctgacacgATG

120

conserved hypothetical protein

1-120/120

97

Burkholderia ambifaria MEX-5

ZP_02905724.1

6

5506

5700

membrane protein

-

GGAAccacaccATG

64

putative phage-encoded membrane protein

1-64/64

93

Burkholderia ambifaria MEX-5

ZP_02905725.1

7

5744

5938

unknown

-

GCACTGAtccgATG

64

hypothetical protein bglu_1 g03740

1-64/64

95

Burkholderia glumae BGR1

YP_002910278.1

8

5943

6155

unknown

-

GAAAAAAGGAGAtcagcATG

70

conserved hypothetical protein

1-70/70

72

Burkholderia sp. CCGE1001

ZP_06292843.1

9

6243

6491

transcriptional activator (Ogr)

-

GGAGTAAGccgaaATG

82

putative phage transcriptional activator Ogr/Delta

1-82/82

92

Burkholderia glumae BGR1

YP_002910024.1

10

6479

6682

unknown

-

AATGAGTAGctcctacgATG

67

hypothetical protein BoklE_00724

1-67/67

85

Burkholderia oklahomensis EO147

ZP_02353966.1

11

6722

6919

unknown

-

GAGGAGcccgcATG

65

hypothetical protein BoklE_00729

1-65/65

87

Burkholderia oklahomensis EO147

ZP_02353967.1

12

6934

7143

unknown

-

AAAGTATAccgaccATG

69

hypothetical protein BoklE_00734

1-62/71

87

Burkholderia oklahomensis EO147

ZP_02353968.1

13

7193

7732

repressor

+

GGTAAGGctagtgtaATG

179

hypothetical protein BCAL0086

1-163/163

62

Burkholderia cenocepacia J2315

YP_002229252.1

14

7904

8179

unknown

+

GAGGGAccagaagaATG

91

hypothetical protein BuboB_27112

1-91/98

50

Burkholderia ubonensis Bu

ZP_02381422.1

15

8238

9329

tail protein (D)

-

GGACGCGGAGccgaaggcATG

363

fels-2 prophage protein

19-366/366

81

Burkholderia oklahomensis EO147

ZP_02353972.1

16

9326

9784

tail protein (U)

-

ACGGAGGAtctgtcccATG

152

bacteriophage tail-related protein

1-133/141

66

Burkholderia oklahomensis EO147

ZP_02353973.1

17

9806

13033

tail tape measure protein (T)

-

GAAGCGGAcacgagtaacgATG

1075

hypothetical protein bglu_1 g01240

1-1079/1079

59

Burkholderia glumae BGR1

YP_002910030.1

18

13158

13508

tail protein (E)

-

AGGACACGcaacatATG

116

gpE+E'

1-114/114

76

Burkholderia pseudomallei 112

ZP_02501899.1

19

13036

13508

tail protein (E+E')

-

AGGACACGcaacatATG

157

gpE+E'

1-100/114

74

Burkholderia pseudomallei 112

ZP_02501899.1

20

13578

14087

tail tube protein (FII)

-

AGGAGtcacacacATG

169

phage major tail tube protein

1-169/169

74

Burkholderia cenocepacia J2315

YP_002229260.1

21

14103

15275

tail sheath protein (FI)

-

AGGAGctgcacaccATG

390

phage tail sheath protein

1-390/390

84

Burkholderia pseudomallei 1655

ZP_04890547.1

22

15328

15951

tail fiber assembly protein

-

ACGGAcctcgaaacATG

207

tail fiber assembly protein from lambdoid prophage e14

1-190/209

85

Burkholderia ubonensis Bu

ZP_02381414.1

23

15969

18632

tail fiber protein

-

GGATAcctgaacATG

887

putative phage tail protein

1-883/883

71

Burkholderia cenocepacia J2315

YP_002229263.1

24

18635

19189

baseplate assembly protein (I)

-

GATGGCGGGGtcgcggATG

184

phage-related tail protein

1-183/184

84

Burkholderia pseudomallei 7894

ZP_02487653.1

25

19182

20087

baseplate assembly protein (J)

-

GAACGGAGtcggcgcATG

301

baseplate J-like protein

1-301/301

90

Burkholderia thailandensis E264

YP_439531.1

26

20084

20446

baseplate assembly protein (W)

-

GGAGCGGtgcATG

120

phage baseplate assembly protein

1-117/120

78

Burkholderia pseudomallei 7894

ZP_02487655.1

27

20443

21138

baseplate assembly protein (V)

-

GAGGGCGGccggcaacATG

231

phage baseplate assembly protein

33-261/261

72

Burkholderia phage ϕ52237

YP_293735.1

28

21304

22080

N-4/N-6 DNA methylase

+

ACGTTGcctcagaaccATG

258

site-specific DNA methyltransferase

34-290/291

78

Burkholderia pseudomallei K96243

YP_111089.1

29

22060

22527

tail completion protein (S)

-

GAGCAATGGGtggcgtgATG

155

phage virion morphogenesis protein

1-155/155

87

Burkholderia thailandensis MSMB43

ZP_02466375.1

30

22527

22943

tail completion protein (R)

-

AGACGGccgcccATG

138

bacteriophage tail completion protein R

1-138/138

73

Burkholderia pseudomallei K96243

YP_111086.1

31

22936

23220

Rz1 (LysC)

-

GGAGActcatcgATG

94

hypothetical phage protein

1-83/91

75

Burkholderia pseudomallei 1655

ZP_04890536.1

32

23057

23497

Rz (LysB)

-

GAAGGcggccgcGTG

146

protein lysB

1-146/146

62

Burkholderia thailandensis E264

YP_439538.1

33

23494

24303

endolysin

-

GGAGCAccgaatcATG

269

putative phage-encoded peptidoglycan binding protein

1-269/270

73

Burkholderia pseudomallei K96243

YP_106791.1

34

24300

24572

holin

-

AGGGGGAAAtgacATG

90

protein of unknown function DUF754

1-88/88

67

Burkholderia sp. CCGE1001

ZP_06292819.1

35

24574

24918

putative antiholin

-

GGAAttgtccgaATG

114

hypothetical protein Bpse38_23639

1-113/114

83

Burkholderia thailandensis MSMB43

ZP_02466369.1

36

24934

25140

tail protein (X)

-

GGTTGAActgatctgATG

68

phage tail protein X

1-68/68

88

Burkholderia pseudomallei 7894

ZP_02487665.1

37

25140

25619

capsid completion protein (L)

-

GAATCGaccATG

159

fels-2 prophage protein

1-159/159

86

Burkholderia thailandensis E264

ZP_05590935.1

38

25719

26408

terminase endonuclease subunit (M)

-

GAGCTGGtggcggcATG

229

hypothetical protein bglu_1 g01450

1-228/229

95

Burkholderia glumae BGR1

YP_002910051.1

39

26405

27418

capsid protein (N)

-

GGAGAAcccaactcATG

337

Gp2, phage major capsid protein, P2 family protein

1-337/337

98

Burkholderia glumae BGR1

YP_002910052.1

40

27454

28266

capsid scaffolding protein (O)

-

GGTTCGAcctctctctATG

270

phage capsid scaffolding protein (GPO)

1-270/270

95

Burkholderia glumae BGR1

YP_002910053.1

41

28345

30180

terminase ATPase subunit (P)

+

AACGAGcggcgtATG

611

phage terminase, ATPase subunit

1-589/589

99

Burkholderia glumae BGR1

YP_002910054.1

42

30177

31226

portal vertex protein (Q)

+

GGAGttctattcATG

349

Gp5, phage portal protein, pbsx family protein

1-347/351

99

Burkholderia glumae BGR1

YP_002910055.1

43

31595

31732

unknown

+

GATGcgcgATG

45

none

44

31722

33290

unknown

-

GGGGAAAGcaacatATG

522

hypothetical protein ECO103_1901

1-526/527

54

E. coli O103:H2 str. 12009

YP_003221840.1

45

33455

34699

EcoRII-C endonuclease

-

AACGGAGcttcggggATG

414

type II restriction endonuclease, EcoRII-C domain protein

1-401/401

77

Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

46

34696

35142

Vsr endonuclease

-

TCGCctgATG

148

DNA mismatch endonuclease Vsr

1-148/148

77

Burkholderia graminis C4D1M

ZP_02883050.1

47

35142

36410

EcoRII DNA cytosine methylase

-

AGCGAGAGcaaatATG

422

DNA-cytosine methyltransferase

1-426/426

81

Burkholderia phytofirmans PsJN

YP_001894783.1

48

36570

37685

unknown

-

AAGCTGAcgctATG

372

conserved hypothetical protein

1-371/371

95

Burkholderia ambifaria MEX-5

ZP_02905764.1

49

37728

38816

unknown

-

AGTTctctaattgacATG

362

GP30 family protein

1-362/362

96

Burkholderia ambifaria MEX-5

ZP_02905765.1

50

38822

39526

unknown

-

GGGAGAAGcctgaATG

234

VRR-NUC domain protein

1-234/234

99

Burkholderia ambifaria MEX-5

ZP_02905766.1

51

39523

40032

unknown

-

AGGAGttcagcATG

169

PAAR repeat-containing protein

1-169/169

97

Burkholderia ambifaria MEX-5

ZP_02905767.1

52

40202

40408

transcriptional regulator

+

AAGGAGAAAtagcATG

68

phage transcriptional regulator, AlpA

1-68/72

94

Burkholderia ambifaria MEX-5

ZP_02905768.1