Table 4 CoreGenes comparison of P2, KS5, KS14 and KL3
From: Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
P2 protein | P2 function | Similar KS5 protein (% ID) | Similar KS14 protein (% ID) | Similar KL3 protein (% ID) |
|---|---|---|---|---|
Old | phage exclusion | gp28 (25%) | Â | Â |
Tin | phage exclusion | Â | Â | Â |
Orf91 | unknown | Â | Â | Â |
A | DNA replication | Â | Â | Â |
Orf83 | unknown | Â | Â | Â |
Orf82 | unknown | Â | Â | Â |
Orf81 | unknown | Â | Â | Â |
Orf80 | unknown | Â | Â | Â |
B | DNA replication | Â | Â | Â |
Orf78 | unknown | Â | Â | Â |
Cox | transcriptional repressor; excision | Â | Â | Â |
C | repressor | Â | Â | Â |
Int | integrase | Â | Â | Â |
Ogr | transcriptional activator | gp8 (39%) | Â | gp9 (34%) |
D | tail protein | gp13 (50%) | gp10 (38%) | gp15 (41%) |
U | tail protein | gp14 (48%) | gp11 (45%) | gp16 (40%) |
T | tape measure protein | gp15 (28%, 42%) | gp12 (25%) | gp17 (31%, 33%) |
E | tail protein | gp16 (59%) | gp13 (55%) | gp18 (55%) |
E+E' | tail protein | gp17 (50%) | gp14 (49%) | gp19 (51%) |
FII | tail tube protein | gp18 (48%) | gp15 (48%) | gp20 (48%) |
FI | tail sheath protein | gp19 (64%) | gp16 (64%) | gp21 (58%) |
Z/Fun | phage exclusion | Â | Â | Â |
G | tail fiber assembly | Â | gp17 (24%) | Â |
H | tail fiber protein | Â | Â | Â |
I | baseplate assembly protein | gp24 (37%) | gp19 (36%) | gp24 (39%) |
J | baseplate assembly protein | gp25 (48%) | gp20 (49%) | gp25 (44%) |
W | baseplate assembly protein | gp26 (43%) | gp21 (39%) | gp26 (36%) |
V | baseplate assembly protein | gp27 (38%) | gp22 (35%) | gp27 (31%) |
Orf30 | unknown | Â | Â | Â |
S | tail completion protein | gp29 (44%) | gp23 (35%) | gp29 (35%) |
R | tail completion protein | gp30 (43%) | gp24 (43%) | gp30 (39%) |
LysC | Rz1-like | Â | gp25 (36%) | gp31 (48%) |
LysB | Rz-like | Â | gp26 (33%) | gp32 (42%) |
LysA | antiholin | Â | Â | Â |
K | endolysin | Â | Â | Â |
Y | holin | Â | Â | Â |
X | tail protein | gp36 (51%) | gp30 (55%) | gp36 (62%) |
L | capsid completion protein | gp38 (45%) | gp31 (39%) | gp37 (43%) |
M | terminase small/endonuclease subunit | gp39 (49%) | gp32 (47%) | gp38 (46%) |
N | major capsid protein | gp40 (51%) | gp33 (54%) | gp39 (55%) |
O | capsid scaffolding protein | gp41 (46%) | gp34 (44%) | gp40 (40%) |
P | terminase large/ATPase subunit | gp42 (59%) | gp35 (60%) | gp41 (57%) |
Q | portal protein | gp43 (57%) | gp36 (54%) | gp42 (55%) |