Identical repeated backbone of the human genome

Zepeda-Mendoza, Cinthya J; Lemus, Tzitziki; Yáñez, Omar; García, Delfino; Valle-García, David; Meza-Sosa, Karla F; Gutiérrez-Arcelus, María; Márquez-Ortiz, Yamile; Domínguez-Vidaña, Rocío; Gonzaga-Jauregui, Claudia; Flores, Margarita; Palacios, Rafael

doi:10.1186/1471-2164-11-60

BMC Genomics

Table 2 In silico hybridization of IRB genes against Venter and Watson genomes

From: Identical repeated backbone of the human genome

						Hit number			Ratios
	#	Gene name	Type	Ensembl ID	Size	Ref	Vent	Wat	Vent/Ref	Wat/Ref
	1	AC006328.5	Novel miRNA	ENSG00000221640	82	2	8	2	4.0	1.0
	2	AC116165.7	Novel miRNA	ENSG00000221000	82	4	17	10	4.3	2.5
	3	AC123768.8	Novel miRNA	ENSG00000221405	82	2	10	7	5.0	3.5
	4	hsa-mir-1233	Known miRNA	ENSG00000221065	82	2	5	2	2.5	1.0
	5	AC119751.3	Novel miRNA	ENSG00000221212	83	2	9	2	4.5	1.0
	6	AC135995.7	Novel miRNA	ENSG00000221095	83	3	3	3	1.0	1.0
	7	AC136698.6	Novel miRNA	ENSG00000221008	83	3	20	4	6.7	1.3
	8	SCARNA18	Novel misc_RNA	ENSG00000212253	83	3	13	14	4.3	4.7
	9	hsa-mir-511-2	Known miRNA	ENSG00000207937	87	2	6	2	3.0	1.0
	10	hsa-mir-514-3	Known miRNA	ENSG00000207866	88	2	5	6	2.5	3.0
	11	SNORD103	Known snoRNA	ENSG00000200154	91	2	17	9	8.5	4.5
	12	AC147055.2	Novel miRNA	ENSG00000212033	93	2	6	1	3.0	0.5
	13	AC068704.4	Novel miRNA	ENSG00000221682	95	2	10	1	5.0	0.5
	14	Y_RNA	Novel misc_RNA	ENSG00000206706	98	4	19	10	4.8	2.5
	15	U6	Novel snRNA	ENSG00000201789	99	2	15	3	7.5	1.5
	16	hsa-mir-1184	Known miRNA	ENSG00000221190	99	3	6	3	2.0	1.0
	17	Y_RNA	Known misc_RNA	ENSG00000201138	100	2	6	7	3.0	3.5
	18	Y_RNA	Novel misc_RNA	ENSG00000199641	100	9	55	26	6.1	2.9
	19	AC137056.3	Novel mi_RNA	ENSG00000221119	102	2	10	6	5.0	3.0
¹	20	AC019322.8	Novel misc_RNA	ENSG00000200514	103	2	13	18	6.5	9.0
	21	U6	Novel snRNA	ENSG00000206655	103	2	3	1	1.5	0.5
	22	AC068020.7	Novel miRNA	ENSG00000221027	104	2	13	3	6.5	1.5
	23	AL031963.40	Novel miRNA	ENSG00000221162	105	2	10	3	5.0	1.5
	24	U6	Novel snRNA	ENSG00000212612	107	3	7	4	2.3	1.3
	25	U6	Novel snRNA	ENSG00000212419	107	4	22	15	5.5	3.8
	26	U6	Novel snRNA	ENSG00000206804	107	2	17	6	8.5	3.0
	27	U6	Novel snRNA	ENSG00000206972	107	2	8	8	4.0	4.0
	28	U6	Novel snRNA	ENSG00000200493	107	3	14	6	4.7	2.0
	29	BX842679.19	Novel rRNA	ENSG00000191555	108	2	4	8	2.0	4.0
	30	AL627230.15	Novel misc_RNA	ENSG00000199432	110	4	22	6	5.5	1.5
	31	5S_rRNA	Novel rRNA	ENSG00000212154	112	2	2	4	1.0	2.0
	32	5S_rRNA	Novel rRNA	ENSG00000212173	113	2	9	2	4.5	1.0
²	33	5S_rRNA	Novel rRNA	ENSG00000206584	116	2	4	0	2.0	0.0
	34	5S_rRNA	Novel rRNA	ENSG00000200336	118	2	11	5	5.5	2.5
¹	35	5S_rRNA	Novel rRNA	ENSG00000199270	119	16	216	162	13.5	10.1
¹	36	5S_rRNA	Novel rRNA	ENSG00000201925	119	16	216	162	13.5	10.1
	37	SNORA11D	Known snoRNA	ENSG00000221475	128	2	5	3	2.5	1.5
	38	AC019322.8	Novel snoRNA	ENSG00000206793	133	2	4	2	2.0	1.0
	39	hsa-mir-1302-2	Known miRNA	ENSG00000221661	138	4	17	10	4.3	2.5
²	40	AC006983.4	Novel snoRNA	ENSG00000207143	139	2	6	0	3.0	0.0
	41	SCARNA17	Novel misc_RNA	ENSG00000212286	143	2	8	2	4.0	1.0
²	42	U1	Novel snRNA	ENSG00000207519	154	2	1	0	0.5	0.0
	43	U1	Novel snRNA	ENSG00000206945	160	2	6	1	3.0	0.5
	44	U1	Novel snRNA	ENSG00000202064	161	2	9	4	4.5	2.0
	45	U1	Novel snRNA	ENSG00000207273	162	2	9	3	4.5	1.5
²	46	U1	Novel snRNA	ENSG00000201183	162	2	3	0	1.5	0.0
	47	U1	Known snRNA	ENSG00000207389	164	7	62	15	8.9	2.1
	48	U1	Novel snRNA	ENSG00000207226	164	2	5	1	2.5	0.5
²	49	U1	Novel snRNA	ENSG00000206585	164	2	3	0	1.5	0.0
	50	U1	Known snRNA	ENSG00000206588	164	7	62	15	8.9	2.1
²	51	U1	Novel snRNA	ENSG00000206828	164	2	0	3	0.0	1.5
	52	U1	Novel snRNA	ENSG00000201105	167	2	6	4	3.0	2.0

52 X non-coding RNA genes within the IRB were compared against the raw sequence reads of the Venter and Watson genomes.
¹ - Genes whose copy number is higher when compared to the NCBI assembly.
² - Genes who had no hits on the Venter or Watson genomes.

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ISSN: 1471-2164

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