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Table 1 Northern data and sequence conservation scores of 117 rhesus monkey ncRNAs.

From: Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

ncRNA Name Clone Number Length Probe ID Northern data Conservation score Consistance
     Chicken Mouse Human Chicken Mouse Human  
Group 1 40 ncRNAs detected by 18 ncRNA probes
7SK 9 332 MT721 yes yes yes 0.98 1 1 Y
RNaseP_nuc 1 340 MP733 yes yes yes 0.12 0.36 1 Y
SNORA61 1 131 MP2422 yes yes yes 0.42 0.36 1 Y
SNORA66 4 131 MP405 yes yes yes 0.69 0.83 1 Y
SNORA81 26 179 MP284 yes yes yes 0.42 0.99 1 Y
SNORD94 5 135 MP141 yes yes yes 0.64 1 1 Y
7SLa 1 299 MP477 yes yes yes 0.97 1 1 Y
7SLb 2 300 MP477 yes yes yes 0.97 1 1 Y
U1-1 14 164 MT369 yes yes yes 1 1 1 Y
U1-2 17 166 MT369 yes yes yes 1 1 1 Y
U1-3 23 166 MT369 yes yes yes 1 1 1 Y
U12 12 150 MT305 yes yes yes 0.87 1 1 Y
U2-1 5 184 MP76 no yes yes 0.99 1 1 Y
U2-2 21 188 MP76 no yes yes 0.99 1 1 Y
U3a 12 148 MT42 yes yes yes 0.70 0.81 1 Y
U3b 9 217 MT42 yes yes yes 0.72 0.8 1 Y
U3c 7 218 MT42 yes yes yes 0.71 0.82 1 Y
U3d 10 218 MT42 yes yes yes 0.70 0.80 1 Y
U3e 8 219 MT42 yes yes yes 0.73 0.82 1 Y
U3f 6 221 MT42 yes yes yes 0.70 0.81 1 Y
U3g 6 216 MT42 yes yes yes 0.71 0.83 1 Y
U3h 9 216 MT42 yes yes yes 0.72 0.81 1 Y
U3i 7 216 MT42 yes yes yes 0.70 0.80 1 Y
U3j 2 216 MT42 yes yes yes 0.73 0.82 1 Y
U3k 20 217 MT42 yes yes yes 0.71 0.81 1 Y
U3l 5 217 MT42 yes yes yes 0.73 0.80 1 Y
U3m 7 217 MT42 yes yes yes 0.72 0.84 1 Y
U3n 6 217 MT42 yes yes yes 0.70 0.83 1 Y
U4 10 146 MT365 yes yes yes 0.99 0.99 1 Y
U5-1 1 97 MP235 yes yes yes 0.70 0.99 0.88 Y
U5-2 6 118 MP235 yes yes yes 0.75 0.99 0.88 Y
U5-3 9 121 MP235 yes yes yes 0.74 0.99 0.88 Y
U5-4 8 121 MP235 yes yes yes 0.73 0.99 0.88 Y
U5-5 6 124 MP235 yes yes yes 0.78 0.99 0.88 Y
U6-1 35 89 MT44 yes yes yes 1 1 1 Y
U6-2 48 104 MT44 yes yes yes 1 1 1 Y
U6atac 43 127 MT65 yes yes yes 0.96 0.96 1 Y
unclassified 2 1 51 MT4702 yes yes yes 0.94 0.94 0.94 Y
Y5 30 102 MP281 yes yes yes 0.62 1 1 Y
Y6 81 112 MP91 yes yes yes 1 1 1 Y
Group 2 51 ncRNAs detected by 49 ncRNA probes
RNase_MRP 1 146 MP690 no yes yes 0.15 0.39 1 Y
SCARNA11 2 144 MP66 no yes yes 0.16 0.85 1 Y
SCARNA15 2 127 MP77 no yes yes 0.22 0.99 1 Y
SCARNA25 3 142 MP407 no yes yes 0.17 1 0.98 Y
SCARNA4 3 128 MP400 no yes yes 0.23 0.98 1 Y
SNORA11 1 115 MP4400 no yes yes 0.20 0.51 1 Y
SNORA13 1 135 MP243 no yes yes 0.19 0.99 1 Y
SNORA14 2 132 MP227 no yes yes 0.20 0.99 1 Y
SNORA15 2 138 MP236 no yes yes 0.20 0.46 0.98 Y
SNORA17 2 134 MP695 no yes yes 0.16 0.87 1 Y
SNORA18 5 133 MP17 no yes yes 0.23 0.98 1 Y
SNORA2 1 137 MP4598 no yes yes 0.17 0.99 1 Y
SNORA23 2 189 MP268 no yes yes 0.23 0.94 1 Y
SNORA24 2 130 MP252 no yes yes 0.41 1 1 Y
SNORA28 3 129 MP306 no yes yes 0.31 0.92 1 Y
SNORA36a 3 132 MP207 no yes yes 0.42 0.98 1 Y
SNORA36b 2 132 MP207 no yes yes 0.45 0.52 1 Y
SNORA4 6 140 MP374 no yes yes 0.17 0.44 1 Y
SNORA41 1 131 MP4579 no yes yes 0.20 0.56 0.98 Y
SNORA42 1 139 MP4011 no yes yes 0.22 0.86 1 Y
SNORA49 2 138 MP427 no yes yes 0.20 0.88 1 Y
SNORA5 3 135 MP4812 no yes yes 0.45 0.84 1 Y
SNORA53 2 248 MP750 no yes yes 0.29 1 1 Y
SNORA54 2 124 MP319 no yes yes 0.24 1 1 Y
SNORA58 4 137 MP4121 no yes yes 0.21 0.52 1 Y
SNORA62 8 150 MP86 no yes yes 0.17 1 0.99 Y
SNORA63 13 135 MP32 no yes yes 0.19 0.99 1 Y
SNORA7 1 140 MP4777 no yes yes 0.20 0.96 1 Y
SNORA70 1 135 MP4769 no yes yes 0.23 0.70 1 Y
SNORA71 3 138 MP241 no yes yes 0.19 0.83 1 Y
SNORA72 5 132 MP356 no yes yes 0.19 0.96 1 Y
SNORA74a 2 134 MP2697 no yes yes 0.12 1 1 Y
SNORA74b 2 203 MP4370 no yes yes 0.12 1 1 Y
SNORD13 23 104 MT370 no yes yes 0.21 0.74 1 Y
SNORD15 2 142 MP4 no yes yes 0.23 1 1 Y
SNORD17a 2 250 MP20 no yes yes 0.12 1 0.99 Y
SNORD17b 6 257 MP20 no yes yes 0.12 1 0.99 Y
SNORD22 1 126 MP4712 no yes yes 0.21 1 1 Y
SNORD46 3 101 MP329 no yes yes 0.26 0.96 0.96 Y
SNORD67 1 104 MP4243 no yes yes 0.45 0.98 0.98 Y
snoU6-53 3 110 MP277 no yes yes 0.24 0.98 1 Y
U11 4 136 MP1393 no yes yes 0.29 1 1 Y
U4atac 35 131 MT4 no yes yes 0.19 0.98 1 Y
unclassified 6 1 137 MP2665 no yes yes 0.18 0.26 0.99 Y
unclassified 7 2 143 MP232 no yes yes 0.17 0.99 1 Y
Vault RNA 2 89 MP331 no yes yes 0.21 0.25 0.53 Y
SNORD116 3 90 MT4173 no no yes 0.28 0.77 1 Y
SNORA31 7 128 MP312 no yes yes 0.66 1 1 N
SNORA73 1 119 MP4480 no yes yes 0.97 0.97 0.96 N
SNORA8 1 140 MP4084 no yes yes 0.69 0.99 1 N
SNORD16 1 94 MT2039 no yes yes 0.85 1 1 N
Group 3 16 ncRNAs detected by 14 probes
SNORA25 2 133 MP3076 no no yes 0.18 0.56 0.99 Y
SNORA64 1 132 MP4716 no no yes 0.18 0.21 1 Y
SNORA68 1 133 MP2580 no no yes 0.18 0.32 1 Y
SNORD24 1 71 MT325 no no yes 0.32 0.32 1 Y
U8 8 137 MT180 no no yes 0.17 0.46 1 Y
unclassified 8 1 153 MP472 no no yes 0.16 0.18 1 Y
Y1 1 77 MP727 no no yes 0.27 0.51 0.92 Y
Y2 4 90 MP727 no no yes 0.26 0.49 0.92 Y
Y3 34 90 MP727 no no yes 0.25 0.53 0.92 Y
Y4 25 96 MT274 no no yes 0.27 0.27 1 Y
SNORA19 4 132 MP4158 no no yes 0.40 0.99 1 N
SNORA27 3 128 MP464 no no yes 0.22 0.98 1 N
SNORA40 1 130 MP4587 no no yes 0.22 0.77 1 N
SNORA43 1 134 MP2188 no no yes 0.16 0.76 1 N
SNORA76 1 135 MP1373 no no yes 0.18 0.93 0.99 N
snosnR60_Z15 1 68 MT2333 no no yes 1 1 1 N
Group 4 8 ncRNAs detected by 8 probes
SNORA20 2 133 MP4330 no no no 0.18 0.18 1 N
SNORD26 1 139 MP2208 no no no 0.20 0.97 0.98 N
SNORD27 2 69 MP299 no no no 0.36 0.72 1 N
SNORD87 1 77 MP4391 no no no 0.31 0.48 1 N
unclassified 1 7 51 MT3898 no no no 0.63 1 1 N
unclassified 3 2 52 MT3338 no no no ** ** ** **
unclassified 4 1 67 MP2207 no no no 0.32 0.35 0.65 N
unclassified 5 2 75 MP2233 no no no 0.33 0.55 0.99 N
Group 5 Only one ncRNA belongs to this group
SNORD45 1 77 MP2242 no yes no 0.34 1 1 N
Group 6 Only one ncRNA belongs to this group        
SNORA50 3 136 MP2895 yes no yes 0.98 1 1 N
  1. ** Without genomic loci in the database of the current genomic version.