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Table 3 Distribution of SSRs in C. melo non-redundant sequences

From: Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries

  Type Number
   BCM RCM BCM - RCM
Monomer     
  A/T 1,192 1,546 2,700
  C/G 47 110 155
Dimer     
  AT 482 710 1,184
  AG/CT 190 250 429
  AC/GT 59 69 128
  CG 4 0 4
Trimer     
  AAT/ATT 392 674 1050
  AAG/CTT 217 332 546
  ATC/GAT 47 39 85
  AAC/GTT 31 38 68
  AGG/CCT 36 37 72
  Other 69 90 150
Tetramer     
  AAAT/ATTT 65 95 159
  AAAG/CTTT 35 42 75
  AATT 20 21 39
  ACAT/ATGT 5 21 26
  AAAC/GTTT 9 9 17
  Other 18 19 37
Pentamer     
  AGCCG/CGGCT 22 62 84
  AAAAG/CTTTT 21 26 47
  AAAAT/ATTTT 13 10 22
  AAAAC/GTTTT 6 6 12
  AATTT/AAATT 3 7 9
  Other 22 16 36
Hexamer     
  AAAAAG/CTTTTT 9 6 15
  AAAAAT/ATTTTT 3 3 6
  AAAGAG/CTCTTT 2 1 3
  GAATTT/AAATTC 0 2 2
  Other 15 23 38
   Total: 3,034 Total: 4,264 Total: 7,198
   Total length: 54,754 bp Total length: 77,267 bp Total length: 130,222 bp
Length distribution     
  12 - 20 nt 2,404 3,436 5,759
  21 - 50 nt 5,76 748 1,307
  51 - 100 nt 51 65 114
  > 100 nt 3 15 18