Table 3 Distribution of SSRs in C. melo non-redundant sequences
From: Genome-wide BAC-end sequencing of Cucumis melo using two BAC libraries
Type | Number | |||
|---|---|---|---|---|
BCM | RCM | BCM - RCM | ||
Monomer | ||||
A/T | 1,192 | 1,546 | 2,700 | |
C/G | 47 | 110 | 155 | |
Dimer | ||||
AT | 482 | 710 | 1,184 | |
AG/CT | 190 | 250 | 429 | |
AC/GT | 59 | 69 | 128 | |
CG | 4 | 0 | 4 | |
Trimer | ||||
AAT/ATT | 392 | 674 | 1050 | |
AAG/CTT | 217 | 332 | 546 | |
ATC/GAT | 47 | 39 | 85 | |
AAC/GTT | 31 | 38 | 68 | |
AGG/CCT | 36 | 37 | 72 | |
Other | 69 | 90 | 150 | |
Tetramer | ||||
AAAT/ATTT | 65 | 95 | 159 | |
AAAG/CTTT | 35 | 42 | 75 | |
AATT | 20 | 21 | 39 | |
ACAT/ATGT | 5 | 21 | 26 | |
AAAC/GTTT | 9 | 9 | 17 | |
Other | 18 | 19 | 37 | |
Pentamer | ||||
AGCCG/CGGCT | 22 | 62 | 84 | |
AAAAG/CTTTT | 21 | 26 | 47 | |
AAAAT/ATTTT | 13 | 10 | 22 | |
AAAAC/GTTTT | 6 | 6 | 12 | |
AATTT/AAATT | 3 | 7 | 9 | |
Other | 22 | 16 | 36 | |
Hexamer | ||||
AAAAAG/CTTTTT | 9 | 6 | 15 | |
AAAAAT/ATTTTT | 3 | 3 | 6 | |
AAAGAG/CTCTTT | 2 | 1 | 3 | |
GAATTT/AAATTC | 0 | 2 | 2 | |
Other | 15 | 23 | 38 | |
Total: 3,034 | Total: 4,264 | Total: 7,198 | ||
Total length: 54,754 bp | Total length: 77,267 bp | Total length: 130,222 bp | ||
Length distribution | ||||
12 - 20 nt | 2,404 | 3,436 | 5,759 | |
21 - 50 nt | 5,76 | 748 | 1,307 | |
51 - 100 nt | 51 | 65 | 114 | |
> 100 nt | 3 | 15 | 18 | |