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Table 3 The 21 differentially expressed genes in m. longissimus between high and low marbled Hanwoo

From: Use of a bovine genome array to identify new biological pathways for beef marbling in Hanwoo (Korean Cattle)

Probe ID 1Gene Names 2Fold Change 3P-value (Modified F-test)
   MAS5.0 RMA GCRMA Mean MAS5.0 RMA GCRMA
Bt.5323.1.S1_at SH3 domain YSC-like 1 (SH3YL1) 0.855 0.738 0.863 0.818 0.0006 0.0002 0.0005
Bt.15675.1.S1_at ADAM metallopeptidase with thrombospondin type 1 motif, 4 (ADAMTS4) 0.938 0.822 1.121 0.953 0.0037 0.0003 0.0005
Bt.21021.1.S1_at TBC1 domain family, member 7 (TBC1D7) 0.614 0.543 0.981 0.712 0.0084 0.0028 0.0017
Bt.2933.1.S1_at Hypothetical protein LOC788205 0.982 0.434 0.591 0.668 0.0013 0.0015 0.0047
Bt.9767.1.S1_a_at Squalene epoxidase (SQLE) 0.764 0.729 1.115 0.867 0.0048 0.0001 0.00002
Bt.621.1.S1_at Cytochrome P450, family 51, subfamily A (CYP51A) 0.603 0.503 0.469 0.525 0.0080 0.0081 0.0178
Bt.23903.1.A1_at Unknown -0.948 -0.343 -0.299 -0.532 0.0087 0.0062 0.0232
Bt.22362.1.S1_at SH3-domain kinase binding protein 1 (SH3KBP1) -0.903 -0.829 -1.152 -0.960 0.0089 0.0090 0.0231
Bt.16752.1.A1_at ATP binding protein (TXNDC9) -0.805 -0.595 -0.679 -0.693 0.0123 0.0051 0.0006
Bt.1020.1.S1_at CDC-like kinase 1 (CDClk1) -0.398 -0.376 -0.451 -0.408 0.0231 0.0018 0.00005
Bt.19107.2.A1_at Transcribed locus -0.432 -0.583 -0.631 -0.548 0.0321 0.0024 0.0012
Bt.28011.1.S1_at Unknown -0.781 -1.212 -1.213 -1.066 0.0376 0.0022 0.0051
Bt.22718.1.A1_at Proteasome (prosome, macropain) activator subunit 4 (PSME4) -0.309 -0.312 -0.357 -0.326 0.0395 0.0087 0.0048
Bt.19107.1.S1_at Transcribed locus -0.515 -0.598 -0.813 -0.642 0.0729 0.0012 0.0045
Bt.25102.1.S1_a_at Hypothetical LOC509649 -0.431 -0.515 -0.544 -0.496 0.0824 0.0033 0.0046
Bt.22038.1.S1_a_at Arginyl-tRNAsynthetase (RARs) -0.194 -0.238 -0.213 -0.215 0.1321 0.0055 0.0045
Bt.21268.1.S2_at Ribosomal protein S6 kinase, 70 kDa (TUBD1) 0.263 0.471 0.643 0.459 0.1632 0.0045 0.0012
Bt.13342.1.S1_at Src-associated protein SAW (UTP15) -0.133 -0.462 -0.555 -0.383 0.2981 0.0011 0.0004
Bt.344.1.S1_at Major histocompatibility complex, class II (BOLA-DMA) -0.168 -0.537 -1.081 -0.595 0.3762 0.0069 0.0035
Bt.21827.2.S1_at Thimetoligopeptidase 1 (THOP1) -1.071 -0.531 -0.856 -0.818 0.0045 0.0087 0.0162
Bt.21794.1.S1_at Hypothetical protein LOC777601 1.241 0.863 1.272 1.124 0.0046 0.0050 0.0149
  1. 1The 21 differentially expressed genes were selected from genes that were significant in at least 2 probe level summarization methods.
  2. 2Fold changes are shown on a log2 scale. Positive values show up regulation in high marbled animals and conversely, negative values show down regulation.
  3. 3P-value is set to P = 0.01 in this study.