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Table 3 Putative sRNAs predicted in silicoa

From: Identification of small RNAs in Francisella tularensis

RNA Length (nt) Coordinates Flanking genes Genomic contextb Potential ORFsc
1 39 599871-599910 FTL_0609-FTL_0610 >68|>|984< -
2 91 865504-865595 FTL_0886-FTL_0887 <1|>|129> 1
3 168 1039023-1039191 FTL_1090-FTL_1091 <4|>|-32> 8, 12*
4 141 1567719-1567860 FTL_1636-FTL_1637 >557|>|488< 2*
5 41 1808414-1808455 FTL_1875-FTL_1876 <349|<|203< 2, 8*
6 89 1251973-1252062 FTL_1313-FTL_1314 >145|<|47< -
7 181 1240899-1241080 FTL_1303-FTL_1304 >26|<|0< 41
8 125 765395-765520 FTL_0777-FTL_0778 >132|<|0> 2
9 87 508319-508406 FTL_0527-FTL_0528 >149|<|0> -
10 225 508181-508406 FTL_0527-FTL_0528 >11|<|0> 52*, 32, 37
11 191 361680-361871 FTL_0391-FTL_0392 <476|<|331< -
12 229 133934-134163 FTL_0131-FTL_0132 <141|<|29< 3
13 92 52224-52316 FTL_0050-FTL_0051 <54|<|0< 7*, 2
14 177 37528-37705 FTL_0035-FTL_0036 >1|>|209> 10*, 4, 24*, 2
15 122 359671-359793 FTL_0389-FTL_0390 >1|>|176< 19, 2, 2
16 390 511941-512331 FTL_0529-FTL_0530 >1|>|-32< 9*, 4*, 7, 41, 7, 16*
17 52 527019-527071 FTL_R0021-FTL_0544 <2|>|8< -
18 36 1251854-1251890 FTL_1313-FTL_1314 >26|<|219< -
19 196 1256490-1256686 FTL_1319-FTL_1320 >57|>|128< 8, 9, 13
20 213 1351294-1351507 FTL_1420-FTL_1421 >67|<|0< 11, 19, 24*
21 119 1681442-1681561 FTL_1744-FTL_1745 <33|<|0< 15*, 3*
22 292 1229654-1229946 FTL_R0033-FTL_1289 >2|>|462< 10, 13*, 2, 11
23 228 49421-49649 FTL_0046-FTL_0047 >80|<|49< 2*, 11, 12*, 20
24 240 765280-765520 FTL_0777-FTL_0778 >17|<|0> 12*, 2, 33*
  1. a sRNA candidates, 5' and 3' ends predicted using SIPHT [35].
  2. b The orientation of the sRNA and its flanking genes (in order of gene numbers). ">" designates a gene encoded on the coding strand and "<" designates a gene encoded on the non-coding strand. Numbers outside of the "|" characters denote the distance between the boundaries of the predicted locus and its flanking genes.
  3. c Potential ORFs are indicated by their length in amino acids. * denotes an ORF staring with an alternative start codon.
  4. For sequence of each RNA see Additional File 2.