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Table 1 Isolates used in this study1

From: Comparative genomics of prevaccination and modern Bordetella pertussis strains

Isolate Coverage Genome size (Mb) Country Year Sero type ptxP ptxA prn fim2 fim3 Ref
Tohama I NA 4,09 Japan 1952 2 ptxP1 ptxA2 prn1 fim2-1 fim3-1 [6]
B0558 16× 4,12 Netherlands 1949 3 ptxP1 ptxA2 prn1 fim2-1 fim3-1 this work
B1193 15× 4,12 Netherlands 1950 2,3 ptxP2 ptxA4 prn7 fim2-2 fim3-1 this work
B1831 28× 4,08 Netherlands 1999 3 ptxP3 ptxA1 prn2 fim2-1 fim3-2 this work
B1834 28× 4,08 Netherlands 1999 3 ptxP1 ptxA1 prn2 fim2-1 fim3-1 this work
B1917 15× 4,08 Netherlands 2000 3 ptxP3 ptxA1 prn2 fim2-1 fim3-2 this work
B1920 15× 4,08 Netherlands 2000 3 ptxP1 ptxA1 prn2 fim2-1 fim3-1 this work
  1. 1 Year of isolation and alleles of main virulence factors are shown. Coverage refers to oversampling in sequence data. Genome size was based on size of the Tohama I genome corrected for the large regions of differences. Abbreviations: Mb, megabases; NA not available.