Table 1 Isolates used in this study1
From: Comparative genomics of prevaccination and modern Bordetella pertussis strains
Isolate | Coverage | Genome size (Mb) | Country | Year | Sero type | ptxP | ptxA | prn | fim2 | fim3 | Ref |
|---|---|---|---|---|---|---|---|---|---|---|---|
Tohama I | NA | 4,09 | Japan | 1952 | 2 | ptxP1 | ptxA2 | prn1 | fim2-1 | fim3-1 | [6] |
B0558 | 16× | 4,12 | Netherlands | 1949 | 3 | ptxP1 | ptxA2 | prn1 | fim2-1 | fim3-1 | this work |
B1193 | 15× | 4,12 | Netherlands | 1950 | 2,3 | ptxP2 | ptxA4 | prn7 | fim2-2 | fim3-1 | this work |
B1831 | 28× | 4,08 | Netherlands | 1999 | 3 | ptxP3 | ptxA1 | prn2 | fim2-1 | fim3-2 | this work |
B1834 | 28× | 4,08 | Netherlands | 1999 | 3 | ptxP1 | ptxA1 | prn2 | fim2-1 | fim3-1 | this work |
B1917 | 15× | 4,08 | Netherlands | 2000 | 3 | ptxP3 | ptxA1 | prn2 | fim2-1 | fim3-2 | this work |
B1920 | 15× | 4,08 | Netherlands | 2000 | 3 | ptxP1 | ptxA1 | prn2 | fim2-1 | fim3-1 | this work |