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Table 1 Summary of A. pompejan a cDNA libraries and assemblies

From: Insights into metazoan evolution from alvinella pompejana cDNAs

  CloneMiner Oligo-capping Global assembly
  Whole animal Pygidium Ventral tissue Gills  
Initial chromatograms 20,549 36,648 16,411 26,569 100,177
Clean sequences 19,739 (96%) 25,419 (69%) 12,871 (78%) 18,105 (68%) 76,134 (76%)
3' poly(A) (%) 1,599 (8%) 3,156 (12%) 5,465 (43%) 1,467 (8%) 11,687 (15%)
Mean length (bp) 633 610 720 776 674
Unigenes after assembly 5,425 8,682 2,831 3,760 15,858
Contigs 1,365 2,327 917 1,193 4,993
Singletons 4,060 6,355 1,914 2,567 10,865
Contig mean length (bp) 993 951 852 931 1,017