Table 1 Summary of A. pompejan a cDNA libraries and assemblies
From: Insights into metazoan evolution from alvinella pompejana cDNAs
| Â | CloneMiner | Oligo-capping | Global assembly | ||
|---|---|---|---|---|---|
| Â | Whole animal | Pygidium | Ventral tissue | Gills | Â |
Initial chromatograms | 20,549 | 36,648 | 16,411 | 26,569 | 100,177 |
Clean sequences | 19,739 (96%) | 25,419 (69%) | 12,871 (78%) | 18,105 (68%) | 76,134 (76%) |
3' poly(A) (%) | 1,599 (8%) | 3,156 (12%) | 5,465 (43%) | 1,467 (8%) | 11,687 (15%) |
Mean length (bp) | 633 | 610 | 720 | 776 | 674 |
Unigenes after assembly | 5,425 | 8,682 | 2,831 | 3,760 | 15,858 |
Contigs | 1,365 | 2,327 | 917 | 1,193 | 4,993 |
Singletons | 4,060 | 6,355 | 1,914 | 2,567 | 10,865 |
Contig mean length (bp) | 993 | 951 | 852 | 931 | 1,017 |