Table 2 Overview of the annotation results.
From: Insights into metazoan evolution from alvinella pompejana cDNAs
Level 1 annotations | Number of proteins (%) |
|---|---|
Proteins with homologs | 7,353 (100%) |
Pfam-A domains | 4,767 (65%) |
Gene Ontology | 5,949 (81%) |
GO Biological Process | 5,072 (69%) |
GO Cellular Component | 4,530 (62%) |
GO Molecular function | 5,601 (76%) |
Text mining definition | 4,611 (63%) |
Enzyme classification | 1,243 (17%) |
EC level 4 (X.X.X.X) | 1,180 (16%) |
Annotated proteins | 6,252 (85%) |
Level 2 annotations | Number of networks |
KEGG pathways | 345 |
Mapped pathways | 202 |
Coverage > 50% | 82 |
STRING subnetworks | 385 |
Mapped subnetworks | 264 |
Coverage > 50% | 63 |