Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

Coppe, Alessandro; Pujolar, Jose Martin; Maes, Gregory E; Larsen, Peter F; Hansen, Michael M; Bernatchez, Louis; Zane, Lorenzo; Bortoluzzi, Stefania

doi:10.1186/1471-2164-11-635

Table 4 List of European eel contigs putatively including a microRNA.

From: Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

European eel contig	miRNA		Species
eu2_c1597	sme-mir-2175	Major	Schmidtea mediterranea
eu2_c1626	ptr-mir-1282-2	Major	Pan troglodytes
eu2_c1815	mmu-mir-203	Major	Mus musculus
eu2_c1886	mmu-mir-2142	Major	Mus musculus
eu2_c1924	mmu-mir-682	Major	Mus musculus
eu_c793	mml-mir-297	Major	Macaca mulatta
eu_c2050	gga-mir-1814	Major	Gallus gallus
eu_c2515	sko-mir-252b	Major	Saccoglossus kowalevskii
eu_c3632	mmu-mir-466d	Minor	Mus musculus
eu_c4382	mmu-mir-1192	Major	Mus musculus
eu_c5018	sko-mir-252b	Major	Saccoglossus kowalevskii
eu_c5414	sme-mir-756	Minor	Schmidtea mediterranea
eu_c6355	mdo-let-7d	Major	Monodelphis domestica
eu_c6415	sme-mir-87d	Major	Schmidtea mediterranea
eu_c7274	mmu-mir-466i	Major	Mus musculus
eu_c7409	bta-mir-220e	Major	Bos taurus
eu_c7978	mmu-mir-1937a	Major	Mus musculus
eu_c8918	ptr-mir-297	Major	Pan troglodytes
eu_c9238	mml-mir-298	Major	Macaca mulatta
eu_c9980	mmu-mir-1192	Major	Mus musculus
eu_c10632	mmu-mir-2142	Major	Mus musculus
eu_c11528	dgr-mir-308	Major	Drosophila grimshawi
eu_c11553	rno-mir-297	Major	Rattus norvegicus
eu_c12746	hsa-mir-522	Major	Homo sapiens
eu_c14091	hsa-mir-224	Minor	Homo sapiens
eu_c14597	mmu-mir-1903	Major	Mus musculus
eu_c14993	mmu-mir-2142	Major	Mus musculus
eu_c16240	bta-mir-2444	Major	Bos taurus
eu_c17072	mmu-mir-669i	Major	Mus musculus
eu_c17332	rno-mir-124-2	Major	Rattus norvegicus
eu_c17397	hsa-mir-297	Major	Homo sapiens
eu_c17444	dan-mir-92a	Major	Drosophila ananassae
eu_c18441	dre-mir-107b	Major	Danio rerio
eu_c19859	mmu-mir-674	Major	Mus musculus
eu_c20136	dan-mir-289	Major	Drosophila ananassae

Contigs were selected when part of their sequence is highly similar to a known Metazoan hairpin microRNA precursor. For each hairpin sequence, we also considered if the regions aligned with the hairpin sequence overlap the major or the minor mature sequence position.

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ISSN: 1471-2164

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