Table 1 Main features of the 19 novel candidate virulence genes from P. infestans plastic secretome.
Gene | FIRs (Kb)a | Swissprot BlastP (e-value)b | Pfam (e-value)c | IF 2 dpid | Commentse |
|---|---|---|---|---|---|
PITG_01659 | 2248 - 24885 | No hit | No hit | 2.0x | Â |
PITG_02545 | 1657 - 14983 | Pectinesterase (7e-63) | PF01095 Pectinesterase(1e-48) | 5.7x | CWDE |
PITG_02700 | 13752 - 14329 | Chymotrypsinogen B2 (5e-22) | PF00089 Trypsin (1e-41) | 3.5x | Detailed in Figure 4 |
PITG_02930 | 6988 - 2141 | 6-hydroxy-D-nicotine oxidase (2e-13) | PF01565 FAD binding (2e-20)PF08031 BBE (9e-08) | 6.5x | Detailed in Figure 5 |
PITG_04202 | 8616 - 13236 | No hit | No hit | 9.8x | Detailed in Figure 7 SCR (94aa, 6.4% C) |
PITG_06212 | 26186 - 23867 | No hit | No hit | 3.5x | Detailed in Figure 8 RCP (232 aa, 11.2% G) |
PITG_06957 | 24029 - 3888 | No hit | No hit | 2.1x | Detailed in Figure 8 RCP (247aa, 21.5% G) |
PITG_07213 | 3344 - 18922 | HEAT repeat-containing protein 1 homolog (3e-04) | No hit | 2.6x | Secreted SCR (114 aa, 6.1% C) |
PITG_07586 | 14222 - 25733 | No hit | PB012569 (8e-07) | 2.6x | Â |
PITG_08563 | 29269 - 8440 | Probable pectin lyase F-2 (4e-56) | PB000314 (4.e-20)PF00544 Pectate lyase C (6e-12) | 2.0x | CWDE |
PITG_16958 | 6840 - 15261 | No hit | PB013434 Pfam-B_13434 (7e-154) | 9.8x | Pep13 motif of transglutaminase elicitor |
PITG_17477 | ND - 5531 | No hit | No hit | 2.0x | Detailed in Figure 8 RCP (374aa, 36.1% G) |
PITG_18284 | 35643 - ND | Carbonic anhydrase (2e-21) | PF00194 Carbonic anhydrase (7e-30) | 5.3x | Detailed in Figure 6 |
PITG_20953 | 7474 - 9088 | Putative glucose-6-P 1-epimerase (8e-29) | PF01263 Aldose epimerase (5e-22) | 2.0x | CWDE |
PITG_21363 | 33627 - ND | No hit | No hit | 3.5x | Â |
PITG_22638 | ND - ND | Mannose-P-dolichol utilization defect 1 (2e-11) | PF04193 PQ-loop (3e-13) | 2.0x | Â |
PITG_22758 | 108426 - 12121 | Alpha-N-arabino-furanosidase B (4e-102) | PF09206 Alpha-L-arabino-furanosidase B (7e-127) | 2.8x | CWDE |
PITG_22899 | 2414 - 21611 | No hit | PF01419 Jacalin (3e-09) | 4.6x | CWDE |
PITG_23138 | 32957 - 16047 | No hit | No hit | 2.5x | Truncated RXLR effector |