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Table 2 Zebrafish CYPs in families 1-4, with Chromosomal location (Zv8), Ensembl gene ID (Release 58), and exon count

From: Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish

Gene name Ensembl 58 Gene ID Ensembl 58 Transcript ID Ensembl 58 Protein ID Chromosome Transcript Start (bp) Transcript End (bp) Strand Exon Ref
CYP1A ENSDARG00000026039 ENSDART00000038200 ENSDARP00000033498 18 3972990 3983879 -1 7 [56]
CYP1B1 ENSDARG00000068934 ENSDART00000099870 ENSDARP00000090643 13 42451108 42458759 -1 2 [62]
CYP1C1 ENSDARG00000058980 ENSDART00000019953 ENSDARP00000004126 Zv8_scaf 3050 158017 161082 1 1 [62]
CYP1C2 ENSDARG00000018298 ENSDART00000016487 ENSDARP00000019538 Zv8_scaf 3050 152452 154638 1 1 [62]
CYP1D1 ENSDARG00000035569 ENSDART00000051565 ENSDARP00000051564 5 23578519 23593172 -1 7 [59]
CYP2AA1 ENSDARG00000070017 ENSDART00000102388 ENSDARP00000093164 23 39112545 39130047 1 9  
CYP2AA2 ENSDARG00000002981 ENSDART00000006065 ENSDARP00000021614a 23 39132514 39145108 1 9  
CYP2AA3 ENSDARG00000034070 ENSDART00000012284 ENSDARP00000014763 23 39160334 39172075 1 9  
CYP2AA4 ENSDARG00000002981 ENSDART00000045049 ENSDARP00000045048 23 39040573 39050888 1 9  
CYP2AA6 RNASEQDARG00000009292 RNASEQDART00000009292 N/Ab 23 38994308 39009052 1 9  
CYP2AA7 ENSDARG00000002981 ENSDART00000007810 ENSDARP00000017742 23 39014695 39036855 1 9  
CYP2AA8 ENSDARG00000002981 ENSDART00000102420 ENSDARP00000093197 23 39075131 39083899 1 9  
CYP2AA9 ENSDARG00000070020 ENSDART00000020538 ENSDARP00000014406 23 39092849 39106493 1 9  
CYP2AA11 ENSDARG00000041418 ENSDART00000060715 ENSDARP00000060714 23 39025380 39036455 1 9  
CYP2AA12 ENSDARG00000002981 ENSDART00000102932 ENSDARP00000093707 23 38971320 38984900 1 9  
CYP2AA13   not in Ensembl Build 58        
CYP2AD2 ENSDARG00000021172 ENSDART00000024350 ENSDARP00000018819 20 25174055 25181567 -1 9  
CYP2AD3 ENSDARG00000022650 ENSDART00000063081 ENSDARP00000063080 20 25187810 25191060 -1 9  
CYP2AD6 ENSDARG00000042956 ENSDART00000063064 ENSDARP00000063063 20 25165262 25173123 -1 9  
CYP2AE1 ENSDARG00000013524 ENSDART00000035654 ENSDARP00000030778 23 39385086 39398666 1 10  
CYP2AE2 RNASEQDARG00000009297 RNASEQDART00000009297 NASEQDARP00000009294 23 39438355 39465937 1 10  
CYP2K6 ENSDARG00000038371 ENSDART00000055979 ENSDARP00000055978 3 8561027 8571051 -1 10 [75]
CYP2K7 ENSDARG00000040433 ENSDART00000101326 ENSDARP00000092100 3 6855362 6872308 -1 10  
CYP2K8 ENSDARG00000040431 ENSDART00000059182 ENSDARP00000059181 3 8585106 8602953 -1 9  
CYP2K16 ENSDARG00000058458 ENSDART00000081328 ENSDARP00000075771 3 8606661 8622465 -1 9  
CYP2K17 ENSDARG00000038369 ENSDART00000055971 ENSDARP00000055970 3 8624449 8631739 -1 9  
CYP2K18 ENSDARG00000038366 ENSDART00000055972 ENSDARP00000055971 3 8671991 8677064 -1 9  
CYP2K19 ENSDARG00000038367 ENSDART00000055973 ENSDARP00000055972 3 8647105 8654962 -1 9  
CYP2K20 ENSDARG00000040426 ENSDART00000059174 ENSDARP00000059173 3 8657079 8669242 -1 9  
CYP2K21 ENSDARG00000040424 ENSDART00000059171 ENSDARP00000059170 3 8638383 8643321 -1 9  
CYP2K22 ENSDARG00000040433 ENSDART00000015232 ENSDARP00000012186 3 6809065 6872358 -1 9  
CYP2K31 ENSDARG00000009874 ENSDART00000059185 ENSDARP00000059184 3 6887113 6898613 -1 9  
CYP2N13 ENSDARG00000042953 ENSDART00000063058 ENSDARP00000063057 20 25154644 25162165 -1 9  
CYP2P6g ENSDARG00000042978 ENSDART00000063100 ENSDARP00000063099 20 25202489 25207822 1 9 [90]g
CYP2P7 ENSDARG00000042980 ENSDART00000063107 ENSDARP00000063106 20 25208167 25213192 1 9  
CYP2P8 ENSDARG00000042982 ENSDART00000063108 ENSDARP00000063107 20 25214780 25219066 1 9  
CYP2P9 ENSDARG00000022631 ENSDART00000030229 ENSDARP00000028831 20 25221011 25224248 1 9  
CYP2P10 ENSDARG00000042990 ENSDART00000063122 ENSDARP00000063121 20 25225641 25232985 1 9  
CYP2P14 ENSDARG00000042994 ENSDART00000063128 ENSDARP00000063127 20 25250397 25255115 1 8  
CYP2R1 ENSDARG00000056587 ENSDART00000079091 ENSDARP00000073546 7 27793618 27799151 1 5  
CYP2U1 ENSDARG00000026548 ENSDART00000048281 ENSDARP00000048280 1 49893260 49901816 -1 6  
CYP2V1 ENSDARG00000018485 ENSDART00000016501 ENSDARP00000011215 20 25191510 25197554 1 9  
CYP2X6 ENSDARG00000079653 ENSDART00000064591 ENSDARP00000064590 25 13917523 13924246 1 9  
CYP2X7 ENSDARG00000044002 ENSDART00000064586 ENSDARP00000064585 25 13906315 13912802 1 9  
CYP2X8 ENSDARG00000043997 ENSDART00000064596 ENSDARP00000064595 25 13889786 13898258 1 9  
CYP2X9 ENSDARG00000070775 ENSDART00000104216 ENSDARP00000094991 25 13881532 13888365 1 9  
CYP2X10c1 ENSDARG00000006501 ENSDART00000052054c ENSDARP00000052053 7 52828535 52831744 -1 9  
CYP2X10c2 ENSDARG00000068283 ENSDART00000098690c ENSDARP00000089461 7 52971112 52974318 -1 9  
CYP2X11 ENSDARG00000068287 ENSDART00000098703 ENSDARP00000089474 7 53000061 53012216 1 9  
CYP2X12c1 ENSDARG00000068290 ENSDART00000098705d ENSDARP00000089476 7 53013611 53022923 1 9  
CYP2X12c2 ENSDARG00000068414 ENSDART00000098924d ENSDARP00000089694 7 54082352 54244690 -1 10  
CYP2Y3 ENSDARG00000068493 ENSDART00000099074 ENSDARP00000089848 15 59576 64111 -1 9  
CYP2Y4 ENSDARG00000007173 ENSDART00000002842 ENSDARP00000013280 15 70518 76649 -1 9  
CYP3A65 ENSDARG00000045627 ENSDART00000067097 ENSDARP00000067096 1 59169705 59179378 -1 13 [80]
CYP3C1 ENSDARG00000015575 ENSDART00000018676 ENSDARP00000009507 3 38092409 38099696 -1 13 [79]
CYP3C2 ENSDARG00000037874 ENSDART00000055203 ENSDARP00000055202 3 38082058 38088687 -1 13  
CYP3C3 ENSDARG00000037873 ENSDART00000102393 ENSDARP00000093169 3 38071126 38078946 -1 13  
CYP3C4 ENSDARG00000070021 ENSDART00000102416 ENSDARP00000093193 3 38059261 38068888 -1 13  
CYP4F43 ENSDARG00000053530 ENSDART00000063442 ENSDARP00000063441 12 46414253 46432708 1 12  
CYP4T8 ENSDARG00000004964 ENSDART00000076955e ENSDARP00000071423 16 3042131 3063539 -1 12  
CYP4V7 ENSDARG00000061585 ENSDART00000087976 ENSDARP00000082409 Zv8 NA9570f 11333 19450 1 11  
CYP4V8 ENSDARG00000062132 ENSDART00000089480 ENSDARP00000083913 1 17310768 17323080 1 11  
  1. a GeneWise reprediction; b no Ensembl gene prediction; c identical DNA; d identical DNA; e incorrect N-term exon; f Chr16 31205762 is probably best location; g There are non-mammalian genes that share synteny but not the same subfamily name with mammalian CYP2J2 s. At present, annotation of fish CYP2 s by BLAST can result in misclassifying fish CYP2 s as CYP2Js (Nelson, 2005, Wang et al. 2007), as strictly interpreted according to nomenclature rules, there is not a CYP2J subfamily in fish.