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Table 1 Oligonucleotides used in this study

From: From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach

Name

Sequence (5' - 3')

Employment

Bxyn2p250f

Biotin-TGATGAAAGGAGAACAACTTCTAGACTG

Affinity Chromatography

Bxyn2p250r

CAGTCTAGAAGTTGTTCTCCTTTCATCA

Affinity Chromatography

CKT067

CACTCCACATGTTAAAGGCGCATTCAACCAGCTTC

EMSA/Affinity Chromatography

CKT068

GAAGCTGGTTGAATGCGCCTTTAACATGTGGAGTG

EMSA/Affinity Chromatography

Exp2488F

GGATCC GACCGCATGGCGCACAAC

Construction of p2488DBD

Exp2488R

CTCGAG TCAACAGAATCCTCTCGGGTCG

Construction of p2488DBD

Exp3151F

GGATCC GAAGAAACCGCCAAGGCGC

Construction of p3151DBD

Exp3151R

CTCGAG AGATGTGTACGTCGGGTTTTC

Construction of p3151DBD

Exp7236F

GGATCC ACACACGACCCCAACGCC

Construction of p7236DBD

Exp7236R

CTCGAG CGCGAGGGGGTTTCCATTC

Construction of p7236DBD

fltn2488f

GGTACC ATGGCACAAGCCCTCGACATTTCC

Construction of p2488

fltn2488r

GCGGCCGC TCAACAGAATCCTCTCGGGTCGAAG

Construction of p2488

LPxyn2f-FAM

FAM-TGATGAAAGGAGAACAACTTCTAGACTGGGTAAATTGGTCAATGGCCAGCCGCTC

FAM-labelled EMSA

LPxyn2r

GAGCGGCTGGCCATTGACCAATTTACCCAGTCTAGAAGTTGTTCTCCTTTCATCA

FAM-labelled EMSA

LPxyn2Mf-FAM

FAM-TGATGAAAGGAGAACAACGGAGAGACTGGGTAAATTGGTCAATGGCCAGCCGCTC

FAM-labelled EMSA

LPxyn2Mr

GAGCGGCTGGCCATTGACCAATTTACCCAGTCTCTCCGTTGTTCTCCTTTCATCA

FAM-labelled EMSA

Pxyn2af

TGATGAAAGGAGAACAACTTCTAGACTG

Radioactive EMSA

Pxyn2ar

TGAC CAGTCTAGAAGTTGTTCTCCTTTC

Radioactive EMSA

Pxyn2aMf

TGATGAAAGGAGAACAACGGAGAGACTG

Radioactive EMSA

Pxyn2aMr

TGAC CAGTCTCTCCGTTGTTCTCCTTTC

Radioactive EMSA

transkr2488f

AGCTTCCACAAACATGACGCCG

Transcript analysis

transkr2488r

CATGGCGATTTCGAGCAGTCG

Transcript analysis

transkr3500f

CTCTTCAGGTCCTTATGAAGGTCG

Transcript analysis

transkr3500r

GAGTAGCTGTCCGATCCACG

Transcript analysis

transkr3151f

GATGTCTGAGGAATCTTCAAGCGC

Transcript analysis

transkr3151r

GGAGTCTTGCTTCGATTGCGG

Transcript analysis

transkr7236f

GTGTACCTGGACCTTGCGC

Transcript analysis

transkr7236r

CTGCTTCTCCTGGGGCG

Transcript analysis

  1. The employment of the oligonucleotides used in this study is given. Underlined bases represent introduced restriction enzyme sites or bases added for labelling. Double underlined bases indicate introduced point mutations.