From: POLYAR, a new computer program for prediction of poly(A) sites in human sequences
Characteristics | D2for PAS-strong sites | D2for PAS-weak sites | D2for PAS-less sites |
---|---|---|---|
PAS-motif, [-40: -1] | 3.18 | 1.98 | Â |
CS-motif* | 1.15 | 1.51 | 1.36 |
GU/U-motif, [+1: +50] | 1.08 | 0.90 | 0.48 |
Upstream Pentamer Composition | 0.72 | 0.52 | 0.83 |
Downstream Pentamer Compositionc | Â | 0.84 | 1.32 |
PAS-CS distance | 1.24 | 0.77 | Â |
CS-GT distance | 0.30 | 0.24 | 0.17 |
Total D2: | 7.67 | 6.75 | 4.16 |