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Table 10 In silico mining of microsatellites within OakContigV1

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Motif

 

Number of microsatellites

Percentage

 

AG

13510

 
 

AT

3199

 
 

AC

2401

 
 

CG

40

 

Dinucleotide

Sub-total

19150

36.25%

 

AAG

5181

 
 

ACC

2784

 
 

AAC

2445

 
 

ATC

2195

 
 

AAT

2161

 
 

AGG

1510

 
 

AGC

1495

 
 

CCG

667

 
 

ACT

525

 
 

ACG

392

 

Trinucleotide

Sub-total

19355

36.63%

Tetranucleotide

5520

10.45%

Pentanucleotide

3579

6.77%

Hexanucleotide

5230

9.90%

 

Total

52834

100.00%

  1. The minimum repeat number of five, four, three, three and three for di-, tri-, tetra-, penta- and hexa-microsatellites, respectively, was applied.
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