Skip to main content

Advertisement

Table 10 In silico mining of microsatellites within OakContigV1

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Motif   Number of microsatellites Percentage
  AG 13510  
  AT 3199  
  AC 2401  
  CG 40  
Dinucleotide Sub-total 19150 36.25%
  AAG 5181  
  ACC 2784  
  AAC 2445  
  ATC 2195  
  AAT 2161  
  AGG 1510  
  AGC 1495  
  CCG 667  
  ACT 525  
  ACG 392  
Trinucleotide Sub-total 19355 36.63%
Tetranucleotide 5520 10.45%
Pentanucleotide 3579 6.77%
Hexanucleotide 5230 9.90%
  Total 52834 100.00%
  1. The minimum repeat number of five, four, three, three and three for di-, tri-, tetra-, penta- and hexa-microsatellites, respectively, was applied.