Table 8 PartiGene assembly summary for libraries sequenced by the Sanger method
Library code | No. reads assembled (a) | No. contigs (b) | No. singletons (c) | No. unigene elements (b+c) | Redundancy (b+c)/(a) |
|---|---|---|---|---|---|
A | 10515 | 1858 | 3885 | 5743 | 54.62% |
B | 8522 | 1610 | 3276 | 4886 | 57.33% |
C | 242 | 43 | 34 | 77 | 31.82% |
D | 116 | 20 | 11 | 31 | 26.72% |
E | 152 | 34 | 61 | 95 | 62.50% |
F | 2353 | 373 | 1128 | 1501 | 63.79% |
G | 1628 | 240 | 902 | 1142 | 70.15% |
H | 14612 | 2585 | 5725 | 8310 | 56.87% |
I | 17166 | 2451 | 7115 | 9566 | 55.73% |
J | 9046 | 2478 | 927 | 3405 | 37.64% |
K | 9004 | 1234 | 4594 | 5828 | 64.73% |
L | 9018 | 1247 | 4466 | 5713 | 63.35% |
M | 19319 | 2883 | 7606 | 10489 | 54.29% |
N | 1558 | 223 | 918 | 1141 | 73.23% |
O | 2021 | 314 | 964 | 1278 | 63.24% |
P | 7373 | 1227 | 3031 | 4258 | 57.75% |
Q | 1618 | 251 | 813 | 1064 | 65.76% |
R | 1552 | 211 | 821 | 1032 | 66.49% |
S | 10058 | 1569 | 4094 | 5663 | 56.30% |
T | 8627 | 2208 | 1101 | 3309 | 38.36% |
Total | 134500 | 17499 | 23445 | 40944 | 30.44% |