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Table 8 PartiGene assembly summary for libraries sequenced by the Sanger method

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Library code No. reads assembled (a) No. contigs (b) No. singletons (c) No. unigene elements (b+c) Redundancy (b+c)/(a)
A 10515 1858 3885 5743 54.62%
B 8522 1610 3276 4886 57.33%
C 242 43 34 77 31.82%
D 116 20 11 31 26.72%
E 152 34 61 95 62.50%
F 2353 373 1128 1501 63.79%
G 1628 240 902 1142 70.15%
H 14612 2585 5725 8310 56.87%
I 17166 2451 7115 9566 55.73%
J 9046 2478 927 3405 37.64%
K 9004 1234 4594 5828 64.73%
L 9018 1247 4466 5713 63.35%
M 19319 2883 7606 10489 54.29%
N 1558 223 918 1141 73.23%
O 2021 314 964 1278 63.24%
P 7373 1227 3031 4258 57.75%
Q 1618 251 813 1064 65.76%
R 1552 211 821 1032 66.49%
S 10058 1569 4094 5663 56.30%
T 8627 2208 1101 3309 38.36%
Total 134500 17499 23445 40944 30.44%
  1. Library codes are as in Table 1.