Skip to main content

Table 5 Candidate genes for the improvement of malting quality.

From: Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement

Probe Set Name E value Putative function ME GP S/T DP AA BG Map loc.
"Out of steep"          
Contig10584_at _ No hit **(+)       
Contig12460_at 7.00E-22 Hypothetical protein P0657H12.23 (Oryza sativa)   **(-)     *(+)  
Contig13150_at _ No hit    *(+)     
Contig14046_at 1.00E-21 Hypothetical protein OJ1756_H07 (Oryza sativa)    *(-)   *(-)   
Contig17218_at _ No hit **(+)     *(+)   
Contig17647_at 2.00E-29 Os08g0100400 protein *(-)     *(-)   
Contig21675_at _ No hit ***(+)     **(+) *(-)  
Contig22323_at 6.00E-38 26S protease regulatory subunit 6B **(+)     *(+)   
Contig23156_at _ No hit   *(-)   *(-)   **(+)  
Contig25703_at 2.00E-32 F-box domain containing protein **(+)      *(-)  
Contig2885_at 4.00E-60 Eukaryotic translation initiation factor 5 (Zea mays)   *(+)     **(-)  
Contig3129_at 1.00E-124 Mitochondrial prohibitin complex protein 2 (Oryza sativa) *(-)   **(-)   *(-)   
Contig3173_at 2.00E-23 Low temperature and salt responsive protein (Pennisetum americanum)       *(+) 2H (51.75)
Contig3191_at 1.00E-121 Mitochondrial ATP synthase (Triticum aestivum)      *(+)   
Contig3339_at 1.00E-115 Protein CP5   *(+)     *(-)  
Contig3668_at 1.00E-115 Ice recrystallization inhibition protein 1 precursor (Triticum aestivum)    *(-)     
Contig3861_at _ No hit *(-) *(-) *(-)   ***(-)   
Contig3863_s_at _ No hit   *(-) *(-)   **(-)   
Contig398_s_at 6.00E-91 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor       *(-)  
Contig4837_at 1.00E-52 Small nuclear ribonucleoprotein Sm D2    *(+)   **(+)   
Contig4839_at 5.00E-52 Small nuclear ribonucleoprotein Sm D2      *(-)   
Contig6845_at _ No hit *(-)     *(-)   
Contig9672_at 7.00E-52 Unknown   *(+) *(+)   **(+)   3H (162.15)
Contig9733_at 9.00E-98 RING-H2 finger protein *(-)       
EBem10_SQ004_D16_at _ No hit     *(+)   *(-)  
EBpi01_SQ001_C06_at _ No hit ***(-)     *(-)   
HB20B24r_s_at 2.00E-85 Hordoindoline b (Hordeum vulgare) *(+)       
HS04A09u_s_at _ No hit ***(+)     *(+)   7H (140.21)
HT12D12u_s_at 5.00E-48 Glutaredoxin (Triticum aestivum)     *(-)    
HV_CEa0001D21r2_at _ No hit   **(+)     *(-) 2HS
HV_CEa0011J09r2_at 2.00E-18 Putative B12D protein (Oryza sativa) **(-)      **(+) 1H (128.14)
HVSMEa0001B10r2_x_at _ No hit      *(-)   
HVSMEl0003B06r2_at _ No hit **(+)     *(+)   
HVSMEl0007F21r2_s_at _ No hit **(+)       
HVSMEl0023H09r2_at _ No hit       *(-)  
rbags14a14_at 2.00E-36 Putative prolyl endopeptidase (Oryza sativa)   *(-)      
rbags14a14_s_at 2.00E-36 Putative prolyl endopeptidase (Oryza sativa)   **(-)      6H (45.44)\
"3d of germination"         
Contig12150_at _ No hit   *(-)   *(-)    7H (140.21)
Contig12460_at 7.00E-22 Hypothetical protein P0657H12.23 (Oryza sativa)   **(-)   *(-)   *(+)  
Contig13847_s_at 3.00E-85 Putative subtilisin-like serine protease (Oryza sativa) **(+)      *(-)  
Contig14046_at 1.00E-21 Hypothetical protein OJ1756_H07 (Oryza sativa)    **(-)   *(-)   
Contig14709_at 3.00E-37 Os01g0579800 protein **(-)   *(-)   *(-)   1H (138.31)
Contig159_at 3.00E-53 Histone H4 *(+) *(+) *(+)   ***(+)   
Contig16647_at 6.00E-42 Os12g0566100 protein    **(-)   *(-)   
Contig17218_at _ No hit **(+)     *(+)   
Contig173_at 6.00E-54 Histone H4      *(-)   
Contig17647_at 2.00E-29 Os08g0100400 protein **(-)     *(-)   
Contig22323_at 6.00E-38 26S protease regulatory subunit 6B **(+)     *(+)   
Contig2885_at 4.00E-60 Eukaryotic translation initiation factor 5 (Zea mays)   *(+)   *(+)   **(-)  
Contig3129_at 1.00E-124 Mitochondrial prohibitin complex protein 2 (Oryza sativa)    **(-)   *(-)   
Contig3668_at 1.00E-115 Ice recrystallization inhibition protein 1 precursor (Triticum aestivum)    *(-)     
Contig3863_s_at _ No hit   *(-) *(-)   **(-)   
Contig4384_at 1.00E-92 DAG protein, chloroplast precursor      *(-)   5H (103.92)
Contig500_at 2.00E-53 Histone H4   *(-) *(-)   **(-)   
Contig5185_at 1.00E-145 RNase S-like protein (Hordeum vulgare) *(-)       1H (135.56)
Contig6845_at _ No hit **(-)     *(-)   
Contig7285_at 2.00E-96 Hypothetical protein P0576F08.31(Oryza sativa)    *(+)     6H (43.15)
Contig7399_s_at 1.00E-115 Ubiquitin carboxyl-terminal hydrolase isozyme L3   **(+)    **(+) *(-) 6H (60.23)
HB27E22r_at _ No hit      *(+)   
HS04A09u_s_at _ No hit ***(+)     *(+)   7H (140.21)
HVSMEl0003B06r2_at _ No hit **(+)     *(+)   
HVSMEl0007F21r2_s_at _ No hit *(+)       
  1. *, **, ***: Significant correlation at p < .05, p < .01, and p < .001, respectively. +: positive correlation, -: negative correlation. Gene annotations were exported from HarvEST:Barley version 1.68. ME: malt extract, GP: grain protein content, S/T: ratio of wort soluble protein to total malt protein, DP: diastatic power, AA: alpha-amylase activity, BG: malt beta-glucan content. Bold type indicates common genes to both time points. The genetic map locations (map loc.) were based on the barley SNP map [24].