|  | Blastn homology | Needleman-Wunsch Global Alignment | |||||||
---|---|---|---|---|---|---|---|---|---|---|
 |  | Majority consensus | deRIP consensus | deRIP improvement factor | Majority consensus | deRIP consensus | deRIP improvement to percent identity | |||
Repeat class | Hit Accession | e-value | bitscore | e-value | bitscore | Â | Â | Percent identity | Â | |
(A) Comparisons to active transposon sequences | ||||||||||
Elsa | AJ277966 | 1.00E-51 | 216 | 1.00E-121 | 381 | 1.8 X | 69.2% | 73.1% | 3.9% | |
Molly | AJ488502 | 7.00E-07 | 66 | 3.00E-86 | 329 | 5.0 X | 72.3% | 77.5% | 5.2% | |
Pixie | AJ488503 | 5.00E-07 | 66 | 2.00E-28 | 137 | 2.1 X | 72.5% | 75% | 2.5% | |
(B) Comparisons to RIP-protected rDNA array consensus (Figure 1: region 4) | ||||||||||
Long, non-rDNA array repeats > 1 kb | 0 | 12800 | 0 | 17220 | 1.3 X | 89.5% | 94.0% | 4.5% | ||
Short, non-rDNA array repeats < 1 kb | 3.00E-10 | 58 | 1.00E-27 | 122 | 2.1 X | 46.2% a | 45.6% a | -0.6% | ||
RIP-mutated terminal rDNA array repeat (Figure 1: region 3) | 0 | 8258 | -- | -- | -- | 85.8% | -- | -- | ||
a Needleman-Wunsch global alignment was performed using a sub-region of long rDNA repeats corresponding to the short rDNA repeat consensus |