|  |  | RIP Dominance Scores | NCBI NR Protein Blastx | GIRI Repbase Tblastx | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Repeat Family | Copy Number | Full Length (bp) | RIP dominance by highest G:C content[20] | RIP dominance by majority consensus | RIP dominance by deRIP consensus | Hits to deRIP consensus | Hits to majority consensus | deRIP Improve-ment factor (Maximum value) | Hits to deRIP consensus | Hits to majority consensus | deRIP Improve-ment factor (Maximum value) |
R8 | 48 | 9143 | 2.96 | 1.95 | 2.91 | 126 | 77 | 1.96 | Â | Â | Â |
R10 | 59 | 1241 | 1.91 | 0.96 | 2.07 | 3 | 2 | 2.13 | 0 | 3 | Â |
X0 | 76 | 3862 | 2.13 | 0.97 | 2.05 | 1 | 0 | Â | 3 | 1 | 1.34 |
R9 | 72 | 4108 | 1.88 | 0.92 | 1.77 | 250 | 25 | 2.75 | 124 | 4 | 1.28 |
Molly | 40 | 1862 | 1.21 | 0.64 | 1.73 | 250 | 161 | 3.78 | 34 | 15 | 1.92 |
X3 | 213 | 9364 | 0.63 | 0.81 | 1.62 | 11 | 10 | 2.8 | Â | Â | Â |
X35 | 19 | 1157 | 1.5 | 1.34 | 1.43 | 1 | 0 | Â | Â | Â | Â |
X96 | 14 | 308 | 0.87 | 0.89 | 1.39 | Â | Â | Â | Â | Â | Â |
X48 | 22 | 265 | 1.82 | 1.16 | 1.33 | Â | Â | Â | Â | Â | Â |
R22 | 23 | 678 | 1.2 | 0.84 | 1.28 | Â | Â | Â | 2 | 2 | 1.06 |
X26 | 38 | 4628 | 1.16 | 1.08 | 1.19 | 57 | 57 | 1.38 | Â | Â | Â |
Pixie | 28 | 1845 | 0.77 | 0.57 | 1.06 | 250 | 190 | 1.79 | 17 | 18 | 1.25 |
R37 | 98 | 1603 | 0.49 | 0.25 | 0.95 | 0 | 55 | Â | 4 | 18 | 1.16 |
R31 | 23 | 3031 | 0.99 | 0.83 | 0.9 | 16 | 15 | 1.44 | 3 | 7 | 1.14 |
X23 | 29 | 685 | 0.45 | 0.4 | 0.9 | Â | Â | Â | 3 | 3 | 0.82 |
X36 | 10 | 512 | 0.89 | 0.78 | 0.87 | 2 | 1 | 1.43 | Â | Â | Â |
Elsa | 17 | 5240 | 0.86 | 0.78 | 0.82 | 250 | 231 | 2.06 | 65 | 30 | 1.44 |
R51 | 39 | 833 | 0.47 | 0.31 | 0.8 | 0 | 3 | Â | 0 | 3 | Â |
X11 | 36 | 8555 | 0.83 | 0.71 | 0.78 | 250 | 250 | 1.35 | 250 | 228 | 2.18 |
X12 | 29 | 2263 | 0.67 | 0.43 | 0.76 | 0 | 1 | Â | 10 | 10 | 1.44 |
R39 | 29 | 2050 | 0.59 | 0.28 | 0.74 | 173 | 149 | 1.54 | 34 | 31 | 1.88 |
X28 | 30 | 1784 | 0.83 | 0.59 | 0.73 | Â | Â | Â | Â | Â | Â |
R25 | 23 | 3320 | 0.25 | 0.6 | 0.65 | 4 | 4 | 1.19 | 3 | 1 | 0.86 |
X15 | 37 | 6231 | 0.61 | 0.46 | 0.61 | 250 | 250 | 1.45 | 243 | 217 | 1.66 |
R38 | 25 | 358 | 0.2 | 0.14 | 0.5 | Â | Â | Â | Â | Â | Â |