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Table 1 Summary of the markers used to develop the CSSLs.

From: Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.)

Chromosome

Markers

Polymorphic markers

 

SSR

InDel

Total

Number

Percentage

Density (Mb)

1

44

43

87

36

41.4

1.21

2

36

20

56

23

41.1

1.56

3

52

12

64

21

32.8

1.73

4

43

30

73

24

32.9

1.47

5

48

30

78

21

26.9

1.42

6

40

30

70

24

34.3

1.30

7

40

20

60

22

36.7

1.35

8

43

20

63

16

25.4

1.77

9

26

5

31

13

41.9

1.77

10

35

20

55

18

32.7

1.27

11

19

31

50

18

36.0

1.58

12

34

18

52

18

34.6

1.53

Total

460

279

739

254

34.4

1.46