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Table 2 Genes for csRNAs predicted in streptococcal species other than S. pneumoniae.

From: Identification of genes for small non-coding RNAs that belong to the regulon of the two-component regulatory system CiaRH in Streptococcus

straina csRNAb sizec begin end
S. mitis B6 csRNA3(B6) 99 23857 23955
  csRNA4(B6) 96 1932077 1931982
  csRNA2(B6) 97 1936359 1936263
  csRNA1(B6) 94 1936548 1936455
  csRNA5(B6) 146 1944227 1944082
S. oralis Uo5 csRNA3(Uo5) 100 21777 21876
  csRNA4(Uo5) 93 1712653 1712561
  csRNA2(Uo5) 98 1714371 1714274
  csRNA6(Uo5) 200 1714673 1714474
  csRNA1(Uo5) 95 1724567 1724473
S. sanguinis SK36 csRNA1-1(SK36) 91 65114 65204
  csRNA1-2(SK36) 94 65322 65415
  csRNA7(SK36) 85 67110 67194
  csRNA8(SK36) 177 545784 545959
  csRNA2(SK36) 95 2160890 2160796
  csRNA1-3(SK36) 84 2183995 2183912
S. agalactiae NEM316 csRNA10(NEM316) 145 459709 459565
  csRNA11(NEM316) 96 622777 622872
  csRNA12(NEM316) 65 1755431 1755367
  csRNA13(NEM316) 66 2160062 2160127
S. dysgalactiae subsp. equisimilus GGS_124 csRNA14(GGS124) 68 1514790 1514723
  csRNA15(GGS124) 141 1916876 1917016
  csRNA16(GGS124) 127 1975022 1974896
  csRNA17(GGS124) 117 1975620 1975736
S. equi subsp. equi 4047 csRNA18(4047) 50d 194835 194786
  csRNA17(4047) 105 200539 200643
S. equi subsp. zooepidemicus MGCS10565 csRNA18(MGCS10565) 67 159514 159448
  csRNA19(MGCS10565) 105 164153 164257
  csRNA20(MGCS10565) 108 236846 236739
S. gallolyticus UCN34 csRNA18(UCN34) 66 2864 2929
  csRNA40-1(UCN34) 65 51782 51718
  csRNA9(UCN34) 63 679884 679822
  csRNA38(UCN34) 138 2175160 2175297
  csRNA39(UCN34) 118 2189828 2189945
  csRNA40-2(UCN34) 71 2266270 2266200
S. gordonii str. Challis substr. CH1 csRNA7(CH1) 88 116691 116778
  csRNA21(CH1) 58 161804 161861
  csRNA2-1(CH1) 95 179826 179920
  csRNA1(CH1) 87 1360105 1360019
  csRNA22(CH1) 202 1721745 1721593
  csRNA2-2(CH1) 95 2038879 2038785
S. mutans UA159 csRNA23-1(UA159) 79 44425 44503
  csRNA24(UA159) 152 303857 303706
  csRNA23-2(UA159) 81 1501299 1501219
S. pyogenes MGAS315 csRNA15(MGAS315) 142 188268 188127
  csRNA14(MGAS315) 68 1276812 1276745
  csRNA25(MGAS315) 129 1784361 1784233
S. suis 05ZYH33 csRNA26(05ZYH33) 172 52590 52761
  csRNA27(05ZYH33) 73 278732 278804
  csRNA28(05ZYH33) 51 352037 352094
S. uberis 0140J csRNA29(0140J) 84 46527 46610
  csRNA30(0140J) 83 54985 55067
  csRNA31(0140J) 67 64276 64210
  csRNA32(0140J) 140 1675433 1675572
S. thermophilus CNRZ1066 csRNA33(CNRZ1066) 66 8588 8653
  csRNA34(CNRZ1066) 85 42534 42618
  csRNA35(CNRZ1066) 64 44784 44847
  csRNA36(CNRZ1066) 97 51297 51393
  csRNA37(CNRZ1066) 127 51629 51755
S. thermophilus St0 plasmid pSt0 csRNA9(pST0) 60 677 736
S. mitis SF100 csRNA2(SF100) 98 2967 2870
  csRNA6(SF100) 200 3271 3072
  1. a The sequences used for the searches have the following accession numbers: S. mitis B6 [GenBank:FN568063]; S. oralis Uo5 [GenBank:FR720602]; S. sanguinis SK36 [GenBank:CP000387];S. agalactiae NEM316 [GenBank:AL732656]; S. dysgalactiae subsp.equisimilus GGS_124 [GenBank:AP010935]; S. equi subsp. equi 4047 [GenBank:FM204883]; S. equi subsp. zooepidemicus MGSC10565 [GenBank:CP001129]; S. gallolyticus UCN34 [GenBank:FN597254]; S. gordonii str. Challis substr. CH1 [GenBank:CP000725]; S. mutans UA159 [GenBank:AE014133]; S. pyogenes MGAS315 [GenBank:AE014074]; S. suis 05ZYH33 [GenBank:CP000407]; S. uberis 0140J [GenBank:AM946015]; S. thermophilus CNRZ1066 [GenBank:CP000024]; S. thermophilus St0 plasmid pSt0 [GenBank:AJ242480]; S. mitis SF100 [GenBank:AY007504].
  2. b csRNAs are considered the same type if at least 80% of the residues are identical with consecutive insertions/deletions of less than three nucleotides. If the same type is present in one strain, the csRNAs are designated -1 and -2, respectively.
  3. c Size is given in nucleotides assuming the transcriptional start seven bases downstream of the -10 region and the last U of the transcriptional terminator as the stop site.
  4. d csRNA gene is truncated by an insertion sequence.