|
straina
|
csRNAb
|
sizec
|
begin
|
end
|
|---|
|
S. mitis B6
|
csRNA3(B6)
|
99
|
23857
|
23955
|
| |
csRNA4(B6)
|
96
|
1932077
|
1931982
|
| |
csRNA2(B6)
|
97
|
1936359
|
1936263
|
| |
csRNA1(B6)
|
94
|
1936548
|
1936455
|
| |
csRNA5(B6)
|
146
|
1944227
|
1944082
|
|
S. oralis Uo5
|
csRNA3(Uo5)
|
100
|
21777
|
21876
|
| |
csRNA4(Uo5)
|
93
|
1712653
|
1712561
|
| |
csRNA2(Uo5)
|
98
|
1714371
|
1714274
|
| |
csRNA6(Uo5)
|
200
|
1714673
|
1714474
|
| |
csRNA1(Uo5)
|
95
|
1724567
|
1724473
|
|
S. sanguinis SK36
|
csRNA1-1(SK36)
|
91
|
65114
|
65204
|
| |
csRNA1-2(SK36)
|
94
|
65322
|
65415
|
| |
csRNA7(SK36)
|
85
|
67110
|
67194
|
| |
csRNA8(SK36)
|
177
|
545784
|
545959
|
| |
csRNA2(SK36)
|
95
|
2160890
|
2160796
|
| |
csRNA1-3(SK36)
|
84
|
2183995
|
2183912
|
|
S. agalactiae NEM316
|
csRNA10(NEM316)
|
145
|
459709
|
459565
|
| |
csRNA11(NEM316)
|
96
|
622777
|
622872
|
| |
csRNA12(NEM316)
|
65
|
1755431
|
1755367
|
| |
csRNA13(NEM316)
|
66
|
2160062
|
2160127
|
|
S. dysgalactiae subsp. equisimilus GGS_124
|
csRNA14(GGS124)
|
68
|
1514790
|
1514723
|
| |
csRNA15(GGS124)
|
141
|
1916876
|
1917016
|
| |
csRNA16(GGS124)
|
127
|
1975022
|
1974896
|
| |
csRNA17(GGS124)
|
117
|
1975620
|
1975736
|
|
S. equi subsp. equi 4047
|
csRNA18(4047)
|
50d
|
194835
|
194786
|
| |
csRNA17(4047)
|
105
|
200539
|
200643
|
|
S. equi subsp. zooepidemicus MGCS10565
|
csRNA18(MGCS10565)
|
67
|
159514
|
159448
|
| |
csRNA19(MGCS10565)
|
105
|
164153
|
164257
|
| |
csRNA20(MGCS10565)
|
108
|
236846
|
236739
|
|
S. gallolyticus UCN34
|
csRNA18(UCN34)
|
66
|
2864
|
2929
|
| |
csRNA40-1(UCN34)
|
65
|
51782
|
51718
|
| |
csRNA9(UCN34)
|
63
|
679884
|
679822
|
| |
csRNA38(UCN34)
|
138
|
2175160
|
2175297
|
| |
csRNA39(UCN34)
|
118
|
2189828
|
2189945
|
| |
csRNA40-2(UCN34)
|
71
|
2266270
|
2266200
|
|
S. gordonii str. Challis substr. CH1
|
csRNA7(CH1)
|
88
|
116691
|
116778
|
| |
csRNA21(CH1)
|
58
|
161804
|
161861
|
| |
csRNA2-1(CH1)
|
95
|
179826
|
179920
|
| |
csRNA1(CH1)
|
87
|
1360105
|
1360019
|
| |
csRNA22(CH1)
|
202
|
1721745
|
1721593
|
| |
csRNA2-2(CH1)
|
95
|
2038879
|
2038785
|
|
S. mutans UA159
|
csRNA23-1(UA159)
|
79
|
44425
|
44503
|
| |
csRNA24(UA159)
|
152
|
303857
|
303706
|
| |
csRNA23-2(UA159)
|
81
|
1501299
|
1501219
|
|
S. pyogenes MGAS315
|
csRNA15(MGAS315)
|
142
|
188268
|
188127
|
| |
csRNA14(MGAS315)
|
68
|
1276812
|
1276745
|
| |
csRNA25(MGAS315)
|
129
|
1784361
|
1784233
|
|
S. suis 05ZYH33
|
csRNA26(05ZYH33)
|
172
|
52590
|
52761
|
| |
csRNA27(05ZYH33)
|
73
|
278732
|
278804
|
| |
csRNA28(05ZYH33)
|
51
|
352037
|
352094
|
|
S. uberis 0140J
|
csRNA29(0140J)
|
84
|
46527
|
46610
|
| |
csRNA30(0140J)
|
83
|
54985
|
55067
|
| |
csRNA31(0140J)
|
67
|
64276
|
64210
|
| |
csRNA32(0140J)
|
140
|
1675433
|
1675572
|
|
S. thermophilus CNRZ1066
|
csRNA33(CNRZ1066)
|
66
|
8588
|
8653
|
| |
csRNA34(CNRZ1066)
|
85
|
42534
|
42618
|
| |
csRNA35(CNRZ1066)
|
64
|
44784
|
44847
|
| |
csRNA36(CNRZ1066)
|
97
|
51297
|
51393
|
| |
csRNA37(CNRZ1066)
|
127
|
51629
|
51755
|
|
S. thermophilus St0 plasmid pSt0
|
csRNA9(pST0)
|
60
|
677
|
736
|
|
S. mitis SF100
|
csRNA2(SF100)
|
98
|
2967
|
2870
|
| |
csRNA6(SF100)
|
200
|
3271
|
3072
|
- a The sequences used for the searches have the following accession numbers: S. mitis B6 [GenBank:FN568063]; S. oralis Uo5 [GenBank:FR720602]; S. sanguinis SK36 [GenBank:CP000387];S. agalactiae NEM316 [GenBank:AL732656]; S. dysgalactiae subsp.equisimilus GGS_124 [GenBank:AP010935]; S. equi subsp. equi 4047 [GenBank:FM204883]; S. equi subsp. zooepidemicus MGSC10565 [GenBank:CP001129]; S. gallolyticus UCN34 [GenBank:FN597254]; S. gordonii str. Challis substr. CH1 [GenBank:CP000725]; S. mutans UA159 [GenBank:AE014133]; S. pyogenes MGAS315 [GenBank:AE014074]; S. suis 05ZYH33 [GenBank:CP000407]; S. uberis 0140J [GenBank:AM946015]; S. thermophilus CNRZ1066 [GenBank:CP000024]; S. thermophilus St0 plasmid pSt0 [GenBank:AJ242480]; S. mitis SF100 [GenBank:AY007504].
- b csRNAs are considered the same type if at least 80% of the residues are identical with consecutive insertions/deletions of less than three nucleotides. If the same type is present in one strain, the csRNAs are designated -1 and -2, respectively.
- c Size is given in nucleotides assuming the transcriptional start seven bases downstream of the -10 region and the last U of the transcriptional terminator as the stop site.
- d csRNA gene is truncated by an insertion sequence.
