Skip to main content

Table 1 SNP variation within line observed with the 5X genome resequencing.

From: SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools

SNP variation No. of SNPs Fraction of SNPs (%)
All reads from both lines differ from the reference 719 288 22
All reads from one line differ from the reference 1 338 437 40
One line biallelic 1 175 291 35
Both lines biallelic 109 796 3
  1. Counts and fraction of the 3 342 812 SNPs detected in genome resequencing based on their variation within line and against the RJF reference.