Table 1 General features of NRG857c genome and other E. coli strains
| Â | Â | Â | Â | Chromosome | Plasmid(s) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Strain | Serotype | Pathotype | Phylogroup | Accession No. | Size (kb) | Total CDS | CDS density (%) | G+C (%) | Total tRNAs | Accession No. | Size (kb) |
NRG857c | O83:H1 | AIEC | B2 | CP001855 | 4,748 | 4,431 | 88.2 | 50.7 | 84 | CP001856 | 147 |
LF82 | O83:H1 | AIEC | B2 | CU651637 | 4,773 | 4,312 | 87.7 | 50.7 | 84 | CU638872 | 108 |
E2348/69 | O127:H6 | EPEC | B2 | FM180568 | 4,965 | 4,703 | 88.2 | 50.6 | 92 | FM180569 FM180570 | 97, 6 |
UTI89 | Â | UPEC | B2 | CP000243 | 5,065 | 5,066 | 91.1 | 50.6 | 88 | CP000244 | 114 |
CFT073 | O6:K2:H1 | UPEC | B2 | AE014075 | 5,231 | 5,473 | 91.9 | 50.5 | 89 | Â | Â |
536 | O6:K15:H31 | UPEC | B2 | CP000247 | 4,938 | 4685 | 88.7 | 50.5 | 81 | Â | Â |
APEC-O1 | O1:K1:H7 | APEC | B2 | CP000468 | 5,082 | 4,467 | 87.5 | 50.6 | 94 | DQ381420 DQ517526 | 241, 174, 105, 46 |
O157 Sakai | O157:H7 | EHEC | E | BA000007 | 5,498 | 5,361 | 88.1 | 50.5 | 105 | AB011548 AB011549 | 92, 3 |
MG1655 (K-12) | OR:H48:K- | Commensal | A | U00096 | 4,639 | 4,294 | 89.0 | 50.8 | 88 | Â | Â |
HS | O9 | Commensal | A | CP000802 | 4,643 | 4,478 | 88.7 | 50.8 | 88 | Â | Â |
E24377A | O139:H28 | ETEC | B1 | CP000800 | 4,979 | 4,873 | 88.6 | 50.6 | 91 | CP000795- CP000799 CP000801 | 79, 74, 70, 34, 6, 5 |