TY - JOUR AU - van Soolingen, D. AU - Qian, L. AU - de Haas, P. E. AU - Douglas, J. T. AU - Traore, H. AU - Portaels, F. AU - Qing, H. Z. AU - Enkhsaikan, D. AU - Nymadawa, P. AU - van Embden, J. D. PY - 1995 DA - 1995// TI - Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia JO - J Clin Microbiol VL - 33 UR - https://doi.org/10.1128/jcm.33.12.3234-3238.1995 DO - 10.1128/jcm.33.12.3234-3238.1995 ID - van Soolingen1995 ER - TY - JOUR AU - Bifani, P. J. AU - Mathema, B. AU - Kurepina, N. E. AU - Kreiswirth, B. N. PY - 2002 DA - 2002// TI - Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains JO - Trends Microbiol VL - 10 UR - https://doi.org/10.1016/S0966-842X(01)02277-6 DO - 10.1016/S0966-842X(01)02277-6 ID - Bifani2002 ER - TY - JOUR AU - Glynn, J. R. AU - Whiteley, J. AU - Bifani, P. J. AU - Kremer, K. AU - van Soolingen, D. PY - 2002 DA - 2002// TI - Worldwide occurrence of Beijing/W strains of Mycobacterium tuberculosis: a systematic review JO - Emerg Infect Dis VL - 8 UR - https://doi.org/10.3201/eid0805.020002 DO - 10.3201/eid0805.020002 ID - Glynn2002 ER - TY - JOUR AU - Sreevatsan, S. AU - Pan, X. AU - Stockbauer, K. E. AU - Connell, N. D. AU - Kreiswirth, B. N. AU - Whittam, T. S. AU - Musser, J. M. PY - 1997 DA - 1997// TI - Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.18.9869 DO - 10.1073/pnas.94.18.9869 ID - Sreevatsan1997 ER - TY - JOUR AU - Manca, C. AU - Tsenova, L. AU - Bergtold, A. AU - Freeman, S. AU - Tovey, M. AU - Musser, J. M. AU - Barry, C. E. AU - Freedman, V. H. AU - Kaplan, G. PY - 2001 DA - 2001// TI - Virulence of a Mycobacterium tuberculosis clinical isolate in mice is determined by failure to induce Th1 type immunity and is associated with induction of IFN-alpha/beta JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.091096998 DO - 10.1073/pnas.091096998 ID - Manca2001 ER - TY - JOUR AU - Lopez, B. AU - Aguilar, D. AU - Orozco, H. AU - Burger, M. AU - Espitia, C. AU - Ritacco, V. AU - Barrera, L. AU - Kremer, K. AU - Hernandez-Pando, R. AU - Huygen, K. PY - 2003 DA - 2003// TI - A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes JO - Clin Exp Immunol VL - 133 UR - https://doi.org/10.1046/j.1365-2249.2003.02171.x DO - 10.1046/j.1365-2249.2003.02171.x ID - Lopez2003 ER - TY - JOUR AU - Manca, C. AU - Tsenova, L. AU - Barry, C. E. AU - Bergtold, A. AU - Freeman, S. AU - Haslett, P. A. AU - Musser, J. M. AU - Freedman, V. H. AU - Kaplan, G. PY - 1999 DA - 1999// TI - Mycobacterium tuberculosis CDC1551 induces a more vigorous host response in vivo and in vitro, but is not more virulent than other clinical isolates JO - J Immunol VL - 162 ID - Manca1999 ER - TY - JOUR AU - Tsenova, L. AU - Ellison, E. AU - Harbacheuski, R. AU - Moreira, A. L. AU - Kurepina, N. AU - Reed, M. B. AU - Mathema, B. AU - Barry, C. E. AU - Kaplan, G. PY - 2005 DA - 2005// TI - Virulence of selected Mycobacterium tuberculosis clinical isolates in the rabbit model of meningitis is dependent on phenolic glycolipid produced by the bacilli JO - J Infect Dis VL - 192 UR - https://doi.org/10.1086/430614 DO - 10.1086/430614 ID - Tsenova2005 ER - TY - JOUR AU - Li, Q. AU - Whalen, C. C. AU - Albert, J. M. AU - Larkin, R. AU - Zukowski, L. AU - Cave, M. D. AU - Silver, R. F. PY - 2002 DA - 2002// TI - Differences in rate and variability of intracellular growth of a panel of Mycobacterium tuberculosis clinical isolates within a human monocyte model JO - Infect Immun VL - 70 UR - https://doi.org/10.1128/IAI.70.11.6489-6493.2002 DO - 10.1128/IAI.70.11.6489-6493.2002 ID - Li2002 ER - TY - JOUR AU - Zhang, M. AU - Gong, J. AU - Yang, Z. AU - Samten, B. AU - Cave, M. D. AU - Barnes, P. F. PY - 1999 DA - 1999// TI - Enhanced capacity of a widespread strain of Mycobacterium tuberculosis to grow in human macrophages JO - J Infect Dis VL - 179 UR - https://doi.org/10.1086/314738 DO - 10.1086/314738 ID - Zhang1999 ER - TY - JOUR AU - Drobniewski, F. AU - Balabanova, Y. AU - Nikolayevsky, V. AU - Ruddy, M. AU - Kuznetzov, S. AU - Zakharova, S. AU - Melentyev, A. AU - Fedorin, I. PY - 2005 DA - 2005// TI - Drug-resistant tuberculosis, clinical virulence, and the dominance of the Beijing strain family in Russia JO - JAMA VL - 293 UR - https://doi.org/10.1001/jama.293.22.2726 DO - 10.1001/jama.293.22.2726 ID - Drobniewski2005 ER - TY - JOUR AU - Borgdorff, M. W. AU - Van Deutekom, H. AU - De Haas, P. E. AU - Kremer, K. AU - Van Soolingen, D. PY - 2004 DA - 2004// TI - Mycobacterium tuberculosis, Beijing genotype strains not associated with radiological presentation of pulmonary tuberculosis JO - Tuberculosis (Edinb) VL - 84 UR - https://doi.org/10.1016/j.tube.2003.10.002 DO - 10.1016/j.tube.2003.10.002 ID - Borgdorff2004 ER - TY - JOUR AU - Parwati, I. AU - Alisjahbana, B. AU - Apriani, L. AU - Soetikno, R. D. AU - Ottenhoff, T. H. AU - van der Zanden, A. G. AU - van der Meer, J. AU - van Soolingen, D. AU - van Crevel, R. PY - 2010 DA - 2010// TI - Mycobacterium tuberculosis Beijing genotype is an independent risk factor for tuberculosis treatment failure in Indonesia JO - J Infect Dis VL - 201 UR - https://doi.org/10.1086/650311 DO - 10.1086/650311 ID - Parwati2010 ER - TY - JOUR AU - Reed, M. B. AU - Domenech, P. AU - Manca, C. AU - Su, H. AU - Barczak, A. K. AU - Kreiswirth, B. N. AU - Kaplan, G. AU - Barry, C. E. PY - 2004 DA - 2004// TI - A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response JO - Nature VL - 431 UR - https://doi.org/10.1038/nature02837 DO - 10.1038/nature02837 ID - Reed2004 ER - TY - JOUR AU - Constant, P. AU - Perez, E. AU - Malaga, W. AU - Laneelle, M. A. AU - Saurel, O. AU - Daffe, M. AU - Guilhot, C. PY - 2002 DA - 2002// TI - Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex. Evidence that all strains synthesize glycosylated p-hydroxybenzoic methyl esters and that strains devoid of phenolglycolipids harbor a frameshift mutation in the pks15/1 gene JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M206538200 DO - 10.1074/jbc.M206538200 ID - Constant2002 ER - TY - JOUR AU - Glynn, J. R. PY - 2006 DA - 2006// TI - Beijing/W genotype Mycobacterium tuberculosis and drug resistance JO - Emerg Infect Dis VL - 12 UR - https://doi.org/10.3201/eid1205.050400 DO - 10.3201/eid1205.050400 ID - Glynn2006 ER - TY - JOUR AU - Frieden, T. R. AU - Sherman, L. F. AU - Maw, K. L. AU - Fujiwara, P. I. AU - Crawford, J. T. AU - Nivin, B. AU - Sharp, V. AU - Hewlett, D. AU - Brudney, K. AU - Alland, D. PY - 1996 DA - 1996// TI - A multi-institutional outbreak of highly drug-resistant tuberculosis: epidemiology and clinical outcomes JO - JAMA VL - 276 UR - https://doi.org/10.1001/jama.1996.03540150031027 DO - 10.1001/jama.1996.03540150031027 ID - Frieden1996 ER - TY - JOUR AU - Bifani, P. J. AU - Plikaytis, B. B. AU - Kapur, V. AU - Stockbauer, K. AU - Pan, X. AU - Lutfey, M. L. AU - Moghazeh, S. L. AU - Eisner, W. AU - Daniel, T. M. AU - Kaplan, M. H. PY - 1996 DA - 1996// TI - Origin and interstate spread of a New York City multidrug-resistant Mycobacterium tuberculosis clone family JO - JAMA VL - 275 UR - https://doi.org/10.1001/jama.1996.03530300036037 DO - 10.1001/jama.1996.03530300036037 ID - Bifani1996 ER - TY - JOUR AU - Pfyffer, G. E. AU - Strassle, A. AU - van Gorkum, T. AU - Portaels, F. AU - Rigouts, L. AU - Mathieu, C. AU - Mirzoyev, F. AU - Traore, H. AU - van Embden, J. D. PY - 2001 DA - 2001// TI - Multidrug-resistant tuberculosis in prison inmates, Azerbaijan JO - Emerg Infect Dis VL - 7 UR - https://doi.org/10.3201/eid0705.017514 DO - 10.3201/eid0705.017514 ID - Pfyffer2001 ER - TY - JOUR AU - Mlambo, C. K. AU - Warren, R. M. AU - Poswa, X. AU - Victor, T. C. AU - Duse, A. G. AU - Marais, E. PY - 2008 DA - 2008// TI - Genotypic diversity of extensively drug-resistant tuberculosis (XDR-TB) in South Africa JO - Int J Tuberc Lung Dis VL - 12 ID - Mlambo2008 ER - TY - JOUR AU - Almeida, D. AU - Rodrigues, C. AU - Ashavaid, T. F. AU - Lalvani, A. AU - Udwadia, Z. F. AU - Mehta, A. PY - 2005 DA - 2005// TI - High incidence of the Beijing genotype among multidrug-resistant isolates of Mycobacterium tuberculosis in a tertiary care center in Mumbai, India JO - Clin Infect Dis VL - 40 UR - https://doi.org/10.1086/427940 DO - 10.1086/427940 ID - Almeida2005 ER - TY - JOUR AU - Toungoussova, O. S. AU - Caugant, D. A. AU - Sandven, P. AU - Mariandyshev, A. O. AU - Bjune, G. PY - 2004 DA - 2004// TI - Impact of drug resistance on fitness of Mycobacterium tuberculosis strains of the W-Beijing genotype JO - FEMS Immunol Med Microbiol VL - 42 UR - https://doi.org/10.1016/j.femsim.2004.05.012 DO - 10.1016/j.femsim.2004.05.012 ID - Toungoussova2004 ER - TY - JOUR AU - Park, Y. K. AU - Shin, S. AU - Ryu, S. AU - Cho, S. N. AU - Koh, W. J. AU - Kwon, O. J. AU - Shim, Y. S. AU - Lew, W. J. AU - Bai, G. H. PY - 2005 DA - 2005// TI - Comparison of drug resistance genotypes between Beijing and non-Beijing family strains of Mycobacterium tuberculosis in Korea JO - J Microbiol Methods VL - 63 UR - https://doi.org/10.1016/j.mimet.2005.03.002 DO - 10.1016/j.mimet.2005.03.002 ID - Park2005 ER - TY - JOUR AU - Anh, D. D. AU - Borgdorff, M. W. AU - Van, L. N. AU - Lan, N. T. AU - van Gorkom, T. AU - Kremer, K. AU - van Soolingen, D. PY - 2000 DA - 2000// TI - Mycobacterium tuberculosis Beijing genotype emerging in Vietnam JO - Emerg Infect Dis VL - 6 UR - https://doi.org/10.3201/eid0603.000312 DO - 10.3201/eid0603.000312 ID - Anh2000 ER - TY - JOUR AU - Iwamoto, T. AU - Yoshida, S. AU - Suzuki, K. AU - Wada, T. PY - 2008 DA - 2008// TI - Population structure analysis of the Mycobacterium tuberculosis Beijing family indicates an association between certain sublineages and multidrug resistance JO - Antimicrob Agents Chemother VL - 52 UR - https://doi.org/10.1128/AAC.00579-08 DO - 10.1128/AAC.00579-08 ID - Iwamoto2008 ER - TY - JOUR AU - Hillemann, D. AU - Kubica, T. AU - Rusch-Gerdes, S. AU - Niemann, S. PY - 2005 DA - 2005// TI - Disequilibrium in distribution of resistance mutations among Mycobacterium tuberculosis Beijing and non-Beijing strains isolated from patients in Germany JO - Antimicrob Agents Chemother VL - 49 UR - https://doi.org/10.1128/AAC.49.3.1229-1231.2005 DO - 10.1128/AAC.49.3.1229-1231.2005 ID - Hillemann2005 ER - TY - JOUR AU - Johnson, R. AU - Warren, R. M. AU - van der Spuy, G. D. AU - Gey van Pittius, N. C. AU - Theron, D. AU - Streicher, E. M. AU - Bosman, M. AU - Coetzee, G. J. AU - van Helden, P. D. AU - Victor, T. C. PY - 2010 DA - 2010// TI - Drug-resistant tuberculosis epidemic in the Western Cape driven by a virulent Beijing genotype strain JO - Int J Tuberc Lung Dis VL - 14 ID - Johnson2010 ER - TY - JOUR AU - van der Spuy, G. D. AU - Kremer, K. AU - Ndabambi, S. L. AU - Beyers, N. AU - Dunbar, R. AU - Marais, B. J. AU - van Helden, P. D. AU - Warren, R. M. PY - 2009 DA - 2009// TI - Changing Mycobacterium tuberculosis population highlights clade-specific pathogenic characteristics JO - Tuberculosis (Edinb) VL - 89 UR - https://doi.org/10.1016/j.tube.2008.09.003 DO - 10.1016/j.tube.2008.09.003 ID - van der Spuy2009 ER - TY - JOUR AU - Streicher, E. M. AU - Warren, R. M. AU - Kewley, C. AU - Simpson, J. AU - Rastogi, N. AU - Sola, C. AU - van der Spuy, G. D. AU - van Helden, P. D. AU - Victor, T. C. PY - 2004 DA - 2004// TI - Genotypic and phenotypic characterization of drug-resistant Mycobacterium tuberculosis isolates from rural districts of the Western Cape Province of South Africa JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.2.891-894.2004 DO - 10.1128/JCM.42.2.891-894.2004 ID - Streicher2004 ER - TY - JOUR AU - Richardson, M. AU - van Lill, S. W. AU - van der Spuy, G. D. AU - Munch, Z. AU - Booysen, C. N. AU - Beyers, N. AU - van Helden, P. D. AU - Warren, R. M. PY - 2002 DA - 2002// TI - Historic and recent events contribute to the disease dynamics of Beijing-like Mycobacterium tuberculosis isolates in a high incidence region JO - Int J Tuberc Lung Dis VL - 6 ID - Richardson2002 ER - TY - JOUR AU - Warren, R. AU - Richardson, M. AU - van der Spuy, G. AU - Victor, T. AU - Sampson, S. AU - Beyers, N. AU - van Helden, P. PY - 1999 DA - 1999// TI - DNA fingerprinting and molecular epidemiology of tuberculosis: use and interpretation in an epidemic setting JO - Electrophoresis VL - 20 UR - https://doi.org/3.0.CO;2-9 DO - 3.0.CO;2-9 ID - Warren1999 ER - TY - JOUR AU - Gagneux, S. AU - Long, C. D. AU - Small, P. M. AU - Van, T. AU - Schoolnik, G. K. AU - Bohannan, B. J. PY - 2006 DA - 2006// TI - The competitive cost of antibiotic resistance in Mycobacterium tuberculosis JO - Science VL - 312 UR - https://doi.org/10.1126/science.1124410 DO - 10.1126/science.1124410 ID - Gagneux2006 ER - TY - JOUR AU - Hanekom, M. AU - van der Spuy, G. D. AU - Streicher, E. AU - Ndabambi, S. L. AU - McEvoy, C. R. AU - Kidd, M. AU - Beyers, N. AU - Victor, T. C. AU - van Helden, P. D. AU - Warren, R. M. PY - 2007 DA - 2007// TI - A recently evolved sublineage of the Mycobacterium tuberculosis Beijing strain family is associated with an increased ability to spread and cause disease JO - J Clin Microbiol VL - 45 UR - https://doi.org/10.1128/JCM.02191-06 DO - 10.1128/JCM.02191-06 ID - Hanekom2007 ER - TY - JOUR AU - Mokrousov, I. AU - Jiao, W. W. AU - Sun, G. Z. AU - Liu, J. W. AU - Valcheva, V. AU - Li, M. AU - Narvskaya, O. AU - Shen, A. D. PY - 2006 DA - 2006// TI - Evolution of drug resistance in different sublineages of Mycobacterium tuberculosis Beijing genotype JO - Antimicrob Agents Chemother VL - 50 UR - https://doi.org/10.1128/AAC.00324-06 DO - 10.1128/AAC.00324-06 ID - Mokrousov2006 ER - TY - JOUR AU - Marais, B. J. AU - Victor, T. C. AU - Hesseling, A. C. AU - Barnard, M. AU - Jordaan, A. AU - Brittle, W. AU - Reuter, H. AU - Beyers, N. AU - van Helden, P. D. AU - Warren, R. M. PY - 2006 DA - 2006// TI - Beijing and Haarlem genotypes are overrepresented among children with drug-resistant tuberculosis in the Western Cape Province of South Africa JO - J Clin Microbiol VL - 44 UR - https://doi.org/10.1128/JCM.01291-06 DO - 10.1128/JCM.01291-06 ID - Marais2006 ER - TY - JOUR AU - Middlebrook, G. AU - Cohn, M. L. PY - 1958 DA - 1958// TI - Bacteriology of tuberculosis: laboratory methods JO - Am J Public Health Nations Health VL - 48 UR - https://doi.org/10.2105/AJPH.48.7.844 DO - 10.2105/AJPH.48.7.844 ID - Middlebrook1958 ER - TY - JOUR AU - Larsen, M. H. AU - Biermann, K. AU - Tandberg, S. AU - Hsu, T. AU - Jacobs, W. R. PY - 2007 DA - 2007// TI - Genetic Manipulation of Mycobacterium tuberculosis JO - Curr Protoc Microbiol VL - Chapter 10 ID - Larsen2007 ER - TY - JOUR AU - Kamerbeek, J. AU - Schouls, L. AU - Kolk, A. AU - van Agterveld, M. AU - van Soolingen, D. AU - Kuijper, S. AU - Bunschoten, A. AU - Molhuizen, H. AU - Shaw, R. AU - Goyal, M. PY - 1997 DA - 1997// TI - Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology JO - J Clin Microbiol VL - 35 UR - https://doi.org/10.1128/jcm.35.4.907-914.1997 DO - 10.1128/jcm.35.4.907-914.1997 ID - Kamerbeek1997 ER - TY - JOUR AU - Kurtz, S. AU - Phillippy, A. AU - Delcher, A. L. AU - Smoot, M. AU - Shumway, M. AU - Antonescu, C. AU - Salzberg, S. L. PY - 2004 DA - 2004// TI - Versatile and open software for comparing large genomes JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-2-r12 DO - 10.1186/gb-2004-5-2-r12 ID - Kurtz2004 ER - TY - JOUR AU - Delcher, A. L. AU - Phillippy, A. AU - Carlton, J. AU - Salzberg, S. L. PY - 2002 DA - 2002// TI - Fast algorithms for large-scale genome alignment and comparison JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.11.2478 DO - 10.1093/nar/30.11.2478 ID - Delcher2002 ER - TY - JOUR AU - Tsolaki, A. G. AU - Gagneux, S. AU - Pym, A. S. AU - Goguet de la Salmoniere, Y. O. AU - Kreiswirth, B. N. AU - Van Soolingen, D. AU - Small, P. M. PY - 2005 DA - 2005// TI - Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis JO - J Clin Microbiol VL - 43 UR - https://doi.org/10.1128/JCM.43.7.3185-3191.2005 DO - 10.1128/JCM.43.7.3185-3191.2005 ID - Tsolaki2005 ER - TY - JOUR AU - Morlock, G. P. AU - Metchock, B. AU - Sikes, D. AU - Crawford, J. T. AU - Cooksey, R. C. PY - 2003 DA - 2003// TI - ethA, inhA, and katG loci of ethionamide-resistant clinical Mycobacterium tuberculosis isolates JO - Antimicrob Agents Chemother VL - 47 UR - https://doi.org/10.1128/AAC.47.12.3799-3805.2003 DO - 10.1128/AAC.47.12.3799-3805.2003 ID - Morlock2003 ER - TY - JOUR AU - DeBarber, A. E. AU - Mdluli, K. AU - Bosman, M. AU - Bekker, L. G. AU - Barry, C. E. PY - 2000 DA - 2000// TI - Ethionamide activation and sensitivity in multidrug-resistant Mycobacterium tuberculosis JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.97.17.9677 DO - 10.1073/pnas.97.17.9677 ID - DeBarber2000 ER - TY - JOUR AU - Dessen, A. AU - Quemard, A. AU - Blanchard, J. S. AU - Jacobs, W. R. AU - Sacchettini, J. C. PY - 1995 DA - 1995// TI - Crystal structure and function of the isoniazid target of Mycobacterium tuberculosis JO - Science VL - 267 UR - https://doi.org/10.1126/science.7886450 DO - 10.1126/science.7886450 ID - Dessen1995 ER - TY - JOUR AU - Wang, F. AU - Langley, R. AU - Gulten, G. AU - Dover, L. G. AU - Besra, G. S. AU - Jacobs, W. R. AU - Sacchettini, J. C. PY - 2007 DA - 2007// TI - Mechanism of thioamide drug action against tuberculosis and leprosy JO - J Exp Med VL - 204 UR - https://doi.org/10.1084/jem.20062100 DO - 10.1084/jem.20062100 ID - Wang2007 ER - TY - JOUR AU - Ramaswamy, S. AU - Musser, J. M. PY - 1998 DA - 1998// TI - Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update JO - Tuber Lung Dis VL - 79 UR - https://doi.org/10.1054/tuld.1998.0002 DO - 10.1054/tuld.1998.0002 ID - Ramaswamy1998 ER - TY - JOUR AU - Strauss, O. J. AU - Warren, R. M. AU - Jordaan, A. AU - Streicher, E. M. AU - Hanekom, M. AU - Falmer, A. A. AU - Albert, H. AU - Trollip, A. AU - Hoosain, E. AU - van Helden, P. D. PY - 2008 DA - 2008// TI - Spread of a low-fitness drug-resistant Mycobacterium tuberculosis strain in a setting of high human immunodeficiency virus prevalence JO - J Clin Microbiol VL - 46 UR - https://doi.org/10.1128/JCM.01938-07 DO - 10.1128/JCM.01938-07 ID - Strauss2008 ER - TY - JOUR AU - Sreevatsan, S. AU - Pan, X. AU - Stockbauer, K. E. AU - Williams, D. L. AU - Kreiswirth, B. N. AU - Musser, J. M. PY - 1996 DA - 1996// TI - Characterization of rpsL and rrs mutations in streptomycin-resistant Mycobacterium tuberculosis isolates from diverse geographic localities JO - Antimicrob Agents Chemother VL - 40 UR - https://doi.org/10.1128/AAC.40.4.1024 DO - 10.1128/AAC.40.4.1024 ID - Sreevatsan1996 ER - TY - JOUR AU - Via, L. E. AU - Cho, S. N. AU - Hwang, S. AU - Bang, H. AU - Park, S. K. AU - Kang, H. S. AU - Jeon, D. AU - Min, S. Y. AU - Oh, T. AU - Kim, Y. PY - 2010 DA - 2010// TI - Polymorphisms associated with resistance and cross-resistance to aminoglycosides and capreomycin in Mycobacterium tuberculosis isolates from South Korean Patients with drug-resistant tuberculosis JO - J Clin Microbiol VL - 48 UR - https://doi.org/10.1128/JCM.01476-09 DO - 10.1128/JCM.01476-09 ID - Via2010 ER - TY - JOUR AU - Suzuki, Y. AU - Katsukawa, C. AU - Tamaru, A. AU - Abe, C. AU - Makino, M. AU - Mizuguchi, Y. AU - Taniguchi, H. PY - 1998 DA - 1998// TI - Detection of kanamycin-resistant Mycobacterium tuberculosis by identifying mutations in the 16S rRNA gene JO - J Clin Microbiol VL - 36 UR - https://doi.org/10.1128/JCM.36.5.1220-1225.1998 DO - 10.1128/JCM.36.5.1220-1225.1998 ID - Suzuki1998 ER - TY - JOUR AU - Aubry, A. AU - Veziris, N. AU - Cambau, E. AU - Truffot-Pernot, C. AU - Jarlier, V. AU - Fisher, L. M. PY - 2006 DA - 2006// TI - Novel gyrase mutations in quinolone-resistant and -hypersusceptible clinical isolates of Mycobacterium tuberculosis: functional analysis of mutant enzymes JO - Antimicrob Agents Chemother VL - 50 UR - https://doi.org/10.1128/AAC.50.1.104-112.2006 DO - 10.1128/AAC.50.1.104-112.2006 ID - Aubry2006 ER - TY - JOUR AU - Sreevatsan, S. AU - Stockbauer, K. E. AU - Pan, X. AU - Kreiswirth, B. N. AU - Moghazeh, S. L. AU - Jacobs, W. R. AU - Telenti, A. AU - Musser, J. M. PY - 1997 DA - 1997// TI - Ethambutol resistance in Mycobacterium tuberculosis: critical role of embB mutations JO - Antimicrob Agents Chemother VL - 41 UR - https://doi.org/10.1128/AAC.41.8.1677 DO - 10.1128/AAC.41.8.1677 ID - Sreevatsan1997 ER - TY - JOUR AU - Johnson, R. AU - Jordaan, A. M. AU - Pretorius, L. AU - Engelke, E. AU - van der Spuy, G. AU - Kewley, C. AU - Bosman, M. AU - van Helden, P. D. AU - Warren, R. AU - Victor, T. C. PY - 2006 DA - 2006// TI - Ethambutol resistance testing by mutation detection JO - Int J Tuberc Lung Dis VL - 10 ID - Johnson2006 ER - TY - JOUR AU - Sreevatsan, S. AU - Pan, X. AU - Zhang, Y. AU - Kreiswirth, B. N. AU - Musser, J. M. PY - 1997 DA - 1997// TI - Mutations associated with pyrazinamide resistance in pncA of Mycobacterium tuberculosis complex organisms JO - Antimicrob Agents Chemother VL - 41 UR - https://doi.org/10.1128/AAC.41.3.636 DO - 10.1128/AAC.41.3.636 ID - Sreevatsan1997 ER - TY - JOUR AU - Cheng, S. J. AU - Thibert, L. AU - Sanchez, T. AU - Heifets, L. AU - Zhang, Y. PY - 2000 DA - 2000// TI - pncA mutations as a major mechanism of pyrazinamide resistance in Mycobacterium tuberculosis: spread of a monoresistant strain in Quebec, Canada JO - Antimicrob Agents Chemother VL - 44 UR - https://doi.org/10.1128/AAC.44.3.528-532.2000 DO - 10.1128/AAC.44.3.528-532.2000 ID - Cheng2000 ER - TY - JOUR AU - Mphahlele, M. AU - Syre, H. AU - Valvatne, H. AU - Stavrum, R. AU - Mannsaker, T. AU - Muthivhi, T. AU - Weyer, K. AU - Fourie, P. B. AU - Grewal, H. M. PY - 2008 DA - 2008// TI - Pyrazinamide resistance among South African multidrug-resistant Mycobacterium tuberculosis isolates JO - J Clin Microbiol VL - 46 UR - https://doi.org/10.1128/JCM.00973-08 DO - 10.1128/JCM.00973-08 ID - Mphahlele2008 ER - TY - CHAP AU - Felsenstein, J. PY - 1993 DA - 1993// BT - PHYLIP (Phylogeny Inference Package) version 5.3c PB - Department of Genetics, University of Washington CY - Seattle ID - Felsenstein1993 ER - TY - JOUR AU - Johnson, R. AU - Warren, R. AU - Strauss, O. J. AU - Jordaan, A. M. AU - Falmer, A. A. AU - Beyers, N. AU - Schaaf, H. S. AU - Murray, M. AU - Cloete, K. AU - van Helden, P. D. PY - 2006 DA - 2006// TI - An outbreak of drug-resistant tuberculosis caused by a Beijing strain in the western Cape, South Africa JO - Int J Tuberc Lung Dis VL - 10 ID - Johnson2006 ER - TY - JOUR AU - Warren, R. M. AU - Victor, T. C. AU - Streicher, E. M. AU - Richardson, M. AU - van der Spuy, G. D. AU - Johnson, R. AU - Chihota, V. N. AU - Locht, C. AU - Supply, P. AU - van Helden, P. D. PY - 2004 DA - 2004// TI - Clonal expansion of a globally disseminated lineage of Mycobacterium tuberculosis with low IS6110 copy numbers JO - J Clin Microbiol VL - 42 UR - https://doi.org/10.1128/JCM.42.12.5774-5782.2004 DO - 10.1128/JCM.42.12.5774-5782.2004 ID - Warren2004 ER - TY - JOUR AU - Victor, T. C. AU - Streicher, E. M. AU - Kewley, C. AU - Jordaan, A. M. AU - van der Spuy, G. D. AU - Bosman, M. AU - Louw, H. AU - Murray, M. AU - Young, D. AU - van Helden, P. D. PY - 2007 DA - 2007// TI - Spread of an emerging Mycobacterium tuberculosis drug-resistant strain in the western Cape of South Africa JO - Int J Tuberc Lung Dis VL - 11 ID - Victor2007 ER - TY - JOUR AU - Pillay, M. AU - Sturm, A. W. PY - 2007 DA - 2007// TI - Evolution of the extensively drug-resistant F15/LAM4/KZN strain of Mycobacterium tuberculosis in KwaZulu-Natal, South Africa JO - Clin Infect Dis VL - 45 UR - https://doi.org/10.1086/522987 DO - 10.1086/522987 ID - Pillay2007 ER - TY - JOUR AU - Ioerger, T. R. AU - Koo, S. AU - No, E. G. AU - Chen, X. AU - Larsen, M. H. AU - Jacobs, W. R. AU - Pillay, M. AU - Sturm, A. W. AU - Sacchettini, J. C. PY - 2009 DA - 2009// TI - Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa JO - PLoS One VL - 4 UR - https://doi.org/10.1371/journal.pone.0007778 DO - 10.1371/journal.pone.0007778 ID - Ioerger2009 ER - TY - JOUR AU - Parwati, I. AU - van Crevel, R. AU - van Soolingen, D. PY - 2010 DA - 2010// TI - Possible underlying mechanisms for successful emergence of the Mycobacterium tuberculosis Beijing genotype strains JO - Lancet Infect Dis VL - 10 UR - https://doi.org/10.1016/S1473-3099(09)70330-5 DO - 10.1016/S1473-3099(09)70330-5 ID - Parwati2010 ER - TY - JOUR AU - Ebrahimi-Rad, M. AU - Bifani, P. AU - Martin, C. AU - Kremer, K. AU - Samper, S. AU - Rauzier, J. AU - Kreiswirth, B. AU - Blazquez, J. AU - Jouan, M. AU - van Soolingen, D. PY - 2003 DA - 2003// TI - Mutations in putative mutator genes of Mycobacterium tuberculosis strains of the W-Beijing family JO - Emerg Infect Dis VL - 9 UR - https://doi.org/10.3201/eid0907.020803 DO - 10.3201/eid0907.020803 ID - Ebrahimi-Rad2003 ER - TY - JOUR AU - Durbach, S. I. AU - Springer, B. AU - Machowski, E. E. AU - North, R. J. AU - Papavinasasundaram, K. G. AU - Colston, M. J. AU - Bottger, E. C. AU - Mizrahi, V. PY - 2003 DA - 2003// TI - DNA alkylation damage as a sensor of nitrosative stress in Mycobacterium tuberculosis JO - Infect Immun VL - 71 UR - https://doi.org/10.1128/IAI.71.2.997-1000.2003 DO - 10.1128/IAI.71.2.997-1000.2003 ID - Durbach2003 ER - TY - JOUR AU - Dos Vultos, T. AU - Blazquez, J. AU - Rauzier, J. AU - Matic, I. AU - Gicquel, B. PY - 2006 DA - 2006// TI - Identification of Nudix hydrolase family members with an antimutator role in Mycobacterium tuberculosis and Mycobacterium smegmatis JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.188.8.3159-3161.2006 DO - 10.1128/JB.188.8.3159-3161.2006 ID - Dos Vultos2006 ER - TY - JOUR AU - Werngren, J. AU - Hoffner, S. E. PY - 2003 DA - 2003// TI - Drug-susceptible Mycobacterium tuberculosis Beijing genotype does not develop mutation-conferred resistance to rifampin at an elevated rate JO - J Clin Microbiol VL - 41 UR - https://doi.org/10.1128/JCM.41.4.1520-1524.2003 DO - 10.1128/JCM.41.4.1520-1524.2003 ID - Werngren2003 ER - TY - JOUR AU - Calver, A. D. AU - Falmer, A. A. AU - Murray, M. AU - Strauss, O. J. AU - Streicher, E. M. AU - Hanekom, M. AU - Liversage, T. AU - Masibi, M. AU - van Helden, P. D. AU - Warren, R. M. PY - 2010 DA - 2010// TI - Emergence of increased resistance and extensively drug-resistant tuberculosis despite treatment adherence, South Africa JO - Emerg Infect Dis VL - 16 UR - https://doi.org/10.3201/eid1602.090968 DO - 10.3201/eid1602.090968 ID - Calver2010 ER -