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Table 1 Proportions of C-terminal consensus classes in interacting proteins.

From: A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding

 

consensus class 1

consensus class 2

consensus class 3

total consensus

total non consensus

 

AD-wrmcDNA library

20%

24%

5%

49%

51%

n = 447

AD-ORFeome library

10%

18%

5%

33%

66%

n = 227

C. elegans proteome

8%

18%

5%

31%

69%

n = 20186

 

consensus class 1

consensus class 2

consensus class 3

total consensus

total non consensus

 

AD-wrmcDNA library

18%

21%

5%

44%

56%

n = 317 nr

AD-ORFeome library

9%

15%

4%

28%

72%

n = 178 nr

C. elegans proteome

8%

18%

5%

31%

69%

n = 20186

  1. Proportions of C-terminal consensus classes for interacting proteins identified in AD-wrmcDNA and AD-ORFeome screens compared with proportions of C-terminal consensus classes in the complete C. elegans proteome (WS190 [16]) are given. Consensus class 1: [ST]X[FWCYMVILA], Consensus class 2 [YFWCMVILA]X[YFWCMVILA], Consensus class 3 [DE]X[YFWCMVILA] (X: any amino acid). Upper panel: proportions calculated using all PDZ-interacting protein pairs, lower panel: proportions calculated using each interacting protein only once when interacting with multiple PDZ domains (nr stands for non-redundant).